Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00233 ATGGGAAGCTCGCCGAGGTTTCCAATGTACGACAATGATTTCGGGTGGGGGAGGCCCTTGGCCGTGCGCAGCGGCGGAGCGAACAAGTTTGATGGCAAGATGTCGGCGTTTCCAGGCAGGAATGGCGGCGGCGCAGTCGATTTGGAGGTGGTTTTGGCGCCGGATACTATGGCGCGACTCGAGTCTGATTCTGAGTTCATGTTTTACGTGTCTAGTTAG 219 0.5662 MGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKMSAFPGRNGGGAVDLEVVLAPDTMARLESDSEFMFYVSS 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00233 72 Pfam Transferase family 1 67 - -
Pumo1g00233 72 Gene3D - 1 67 IPR023213 -
Pumo1g00233 72 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00233 Pumo-Chr1 3600824 3601042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00233 6 70 Monolignol Biosynthesis Gene Families AT5G48930 32.308 1.72e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00233 - - gmx:100792476 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00233 1 3600824 3601042 Pumo9g02349 9 56809640 56810719 PCT