Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00228 ATGGAATTCGAGACTCCATATCCAACTTGTTTTATGTCAAATTCAAATTGGTTTTCTCAAGAAGGCCACTACACAGAATGGACAAGAGAAGAGAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGACAGATGGCTGAGGGTTGCAGCCATGCTCCCTGGAAAAACTGTCTATGATGTGATCAAACAGTACAGAGAATTGGAAGAAGATGTTTGTGAAATAGAAGCAGGGAGGATTCCAGTTCCTGGATATCCTACCTCTTCTTTCACATTGGAGATGGTTGACAACCAATGTTATTATGATGCATGCAGAAAGAAGCCTGCAACTGTCAGGAGTTCTGATCAGGAGAGGAAGAAAGGAGTCCCTTGGACAGAAGAGGAACACAGACGTTTTCTTATGGGACTTTTAAAGTATGGTAAAGGGGATTGGAGAAATATCTCTCGCAATTTTGTGGTGACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAAAGGAGGCCTAGTATCCATGATATCACCATTGTTAATCTTACATCAGATCAAGAGAAGCCTCTTTTATTCAATGATGAGTCTCACATGACTTCTGAGCTACAGAAGCTGACTAGCATGCCAAAAGTACAACTTGAATGGATTAATCGCCACAACAACAATGGGTCACGTATGGTTGTCAACCCAAATTATGATATGTTCATGTCACCTTCATCTGGCATCTCTTCCAAGACCCTCAAGTTGCAAGGGCAGGATTTCTATGAATGTGCTTTTCATGAGACTTATGCCAAGCTTAAAAATCCAGGTTTCAGGACGGCTTCTAGAGACTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 915 0.412 MEFETPYPTCFMSNSNWFSQEGHYTEWTREENKKFESALAIYDKDTPDRWLRVAAMLPGKTVYDVIKQYRELEEDVCEIEAGRIPVPGYPTSSFTLEMVDNQCYYDACRKKPATVRSSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTSDQEKPLLFNDESHMTSELQKLTSMPKVQLEWINRHNNNGSRMVVNPNYDMFMSPSSGISSKTLKLQGQDFYECAFHETYAKLKNPGFRTASRDFNKEAIFGIHAL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00228 304 CDD SANT 127 171 IPR001005 -
Pumo1g00228 304 CDD SANT 26 72 IPR001005 -
Pumo1g00228 304 SMART sant 23 75 IPR001005 -
Pumo1g00228 304 SMART sant 124 174 IPR001005 -
Pumo1g00228 304 SUPERFAMILY Homeodomain-like 122 176 IPR009057 -
Pumo1g00228 304 ProSiteProfiles SANT domain profile. 128 176 IPR017884 -
Pumo1g00228 304 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 240 IPR043363 -
Pumo1g00228 304 FunFam transcription factor MYB1R1 126 177 - -
Pumo1g00228 304 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Pumo1g00228 304 Pfam Myb-like DNA-binding domain 127 171 IPR001005 -
Pumo1g00228 304 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Pumo1g00228 304 ProSiteProfiles Myb-like domain profile. 120 172 IPR001005 -
Pumo1g00228 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 123 175 IPR006447 GO:0003677
Pumo1g00228 304 Gene3D - 126 177 - -
Pumo1g00228 304 Gene3D - 18 86 - -
Pumo1g00228 304 FunFam Transcription factor SRM1 19 86 - -
Pumo1g00228 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 176 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00228 Pumo-Chr1 3507867 3510296 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g00228 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00228 - - gmx:100783469 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00228 1 3507867 3510296 Pumo9g02353 9 56951469 56953662 ECH
Pumo1g00228 1 3507867 3510296 Pumo1g00228 1 3507867 3510296 ECH
Pumo5g01198 5 27290225 27293043 Pumo1g00228 1 3507867 3510296 ECH
Pumo1g00228 1 3507867 3510296 Pumo5g01198 5 27290225 27293043 ECH
Pumo1g00228 1 3507867 3510296 Pumo9g02353 9 56951469 56953662 PCT