Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00212 ATGAAGATCCTCAAAATGTCGGTTGCAGATGACAAGTCTCAGTCTCACGTTGTTGTTGCCGATGCCGACATTCACAATGGTTGTCCTCCCCGGACCTCGGTCGGCGGCGAGGGCTGTTCTGACAAGGAGATTGTGCCATTGTCTGAAATTGAGAGCGTGGAGGTGGATCTGGTGGTGCCGGATGTGAAGGTGCATTTGGATATGGTGAAGAGGAACTGCAGGATTTGTTATCTCAGCATGGACATCACCAACCATAACAGTGAATCTGGGAATGCCACTCCCATTGAGCTGGGATGTTCTTGCAAAGAGGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAATTTGTGAAATCTGTGGATCCATTGCACGCAATGTAACTGGTGTAGTTGAAGTCCAAACGAATGAACAGTGGAATGAAGCAAATAATGATGGCTCAATGGTACCACCAACTGGACCTGCCCCCCCAGCAGAAACTCGACATTTCTGGCATGGTCAACGGTTCCTGAATTTCCTTCTTGCCTGTATGGTCTTTGCTTTTGTCATATCCTGGCTTTTTCACTTCAATATGACCTCATGA 606 0.4752 MKILKMSVADDKSQSHVVVADADIHNGCPPRTSVGGEGCSDKEIVPLSEIESVEVDLVVPDVKVHLDMVKRNCRICYLSMDITNHNSESGNATPIELGCSCKEDLAAAHKHCAEAWFKIKGNKICEICGSIARNVTGVVEVQTNEQWNEANNDGSMVPPTGPAPPAETRHFWHGQRFLNFLLACMVFAFVISWLFHFNMTS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00212 201 PANTHER ZINC FINGER, RING-CH-TYPE 32 200 - -
Pumo1g00212 201 Pfam RING-variant domain 73 128 IPR011016 GO:0008270
Pumo1g00212 201 ProSiteProfiles Zinc finger RING-CH-type profile. 65 135 IPR011016 GO:0008270
Pumo1g00212 201 SUPERFAMILY RING/U-box 69 131 - -
Pumo1g00212 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 137 IPR013083 -
Pumo1g00212 201 SMART ringv_2 72 129 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00212 Pumo-Chr1 3365498 3367535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00212 30 201 C3H Transcription Factor Family AT5G05830 56.983 5.26e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00212 - - gmx:100818979 243.432