Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00195 ATGGCTCCTCCTTCAGATATCAATCATCTTTCTCACCCTTGTATATACGGGGACTTTGTTTCTTCATACACAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAACATTGGGTCCAGTAGAGGAAGGAGTGGTGGTCTTCATCTGCAGCAGCCTGTAGAGGAAAACATGGTTTGGCCAGCTCCAGCTAGATCGTTGGATGATCGTGCTAGATCTCGGAAGGAGGAAGAGGATCTAGATCGTGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACTGGATATAGATGGCGAACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCACGTCCTCCATATGCCCCTGTACCTCTTTATCCCCGGGGATATGGTGTGTCATCGCATAACAGAATATGTGGAGGGTGCAGCCAAGAGATACTCTATGGCAATTGTTTAGGAGTTGGTCATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCATGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAGGAATTGACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCAATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCGCGGGATGAAAGATACTATAGATTGGAAGATGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAACGGACACTGGTGAATGTCAACCCCTTTATCATGCTATCAGAGACTATTATGAAGGAATGAATATGAAAATAGATCAACAAGTCCCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGGGAGAAGAATGGTTTCCATCACTTACCAGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGTGTATATAGATGGCCAAGAATTGGAGGCCATCGATTAATAGGGATGAGATCTCAAGCTCAAAGGCTGCCTAGAAAGTGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCACATGAGTTGATGCATGCTTGGTTACGCCTCAAAGGTTACCAAAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGATGCAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCAGCAGCTTCTTCTTCCTCCTCCTACTCTAACTCATCAAAGAAAGGTAGAAAATCTCATGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCAGCCAATGAAGCTGTGAATAAATATGGTTTACGTCGCACTGTGGAGCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1530 0.4248 MAPPSDINHLSHPCIYGDFVSSYTERKSGFMKWFGKIFNIGSSRGRSGGLHLQQPVEENMVWPAPARSLDDRARSRKEEEDLDRAIALSLGENFKRPTGYRWRTGTDEDYAKALQDRMFSSARPPYAPVPLYPRGYGVSSHNRICGGCSQEILYGNCLGVGHSYFHPDCFRCHSCRYPITEHEFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRDERYYRLEDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMKIDQQVPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVYRWPRIGGHRLIGMRSQAQRLPRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSPEVEEGICQVLSYMWLDAEVMSCARTMPSTSAASSSSSYSNSSKKGRKSHVENKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRRTVEHIRLTGHFPL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00195 509 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Pumo1g00195 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Pumo1g00195 509 Gene3D Cysteine Rich Protein 139 203 - -
Pumo1g00195 509 SMART lim_4 144 196 IPR001781 -
Pumo1g00195 509 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Pumo1g00195 509 Pfam LIM domain 145 198 IPR001781 -
Pumo1g00195 509 CDD LIM_DA1 145 197 - -
Pumo1g00195 509 PANTHER PROTEIN DA1-RELATED 2 33 508 IPR045218 -
Pumo1g00195 509 Pfam Protein DA1 294 504 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00195 Pumo-Chr1 3056028 3061297 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo1g00195 DA1-like 5.2e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00195 - - gmx:100798829 1009.21