Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00188 ATGGAGTCCACGGCGAGACTCTTCCTCTTGGCGGTTCTTCTACTGCTGCTATCAGGCGCCCCGCACGTGTCACCCGCCACCCCGTGCCCGCCGTGCGGCAACACGACGGTGCCGTTTCCTCTGAGCACAACCTCAGCATGCGGCGACCCCTCGTACAAAATCCGTTGCAGCAGCAGTTCCAACACCCTCGTCTTCGACACGCTCAACAACTCCTACCCGATCGAGTCCATCGACCCGAAATCCCAGCGCCTCGTGATCCGACCCTCCCCGCTGTTACCGGACACGTGCGTGTCCACCGATAAGGTGCACCAGGGGATCCAGCTCAACAACACCCTCCCCTTCAACATCACCAGCTCCAACACCATCGTCTACCTCAACTGCACCCTCACGCTCCTCCAGTCCCCCCTCAACTGCTCCGCCGCCAGTGCCTGCCACTCCTACATCAACGCCACCGCCTCCGCCTCCCCCTGCCACTCCGGCCCCCTCTGCTGCACCTACCGCACCGGTGGCTCCAGCAACTCCTACATGATTCGCGTCAGAGACTCTGGTTGCAGCGCTTACTCCAGTTTTGTTAACCTCAACCCGGCTCTCCCCGTCAACCGCTGGCCCCAACCCGGTTTGGAGATTCAGTGGCTCTCGCCCAAAGAGACCGTGTGTGGGTCCCAGGCTGATTGCGACTCTGCCACGTCGACTTGTGGGCCCGATGCTTCCTCTTCGCGCGGGATTAAGAGGTGCTTTTGTAACGGTGGGCTCGTGTGGGACCCTATCCAAGGGGTGTGCGCTAAAAAAATTACTTGCCAGAACCCTGATGGTTGTGACGACTCATCTCACAGAACGGCCATAATAGCAGGTTCAGTATGTGGGGTTGGAGCTGCACTCATCCTAGCCATCATTGCCTTTCTACTCTACAAACGCCACAGGCGCATCAAAGAAGCACAAGCACGGCTAGCCAAAGAGCGTGAAGGAATTCTGAATGCCAGTAATGGGGGTAGAGCCGCTAAACTTTTCAGTGGCAAAGAGATAAAGAAAGCCACAAACGACTTCTCCAGTGATCGGCTTCTTGGTGTTGGAGGCTATGGTGAAGTTTACAAGGGCATTCTTCAAGATGGCACTGTTGTGGCTGTCAAGTGTGCCAAACTTGGCAACCCCAAAGGCACTGACCAAGTCCTCAATGAGGTTCGCATATTATGCCAAGTTAACCACCGCAACCTTGTTGGTTTACTTGGTTGCTGTGTGGAACTGGAGCAGCCTATTATGGTTTATGAGTTCATAGAAAATGGGACCCTTCTTGATCACTTGCAAGGTCAAATGCCCAAGGGCCGTGGCTTGCTTACTTGGAATCATCGCCTTCAAATTGCACGCTACACTGCTGAGGGTCTTGCTTACCTTCACTTCATGGCTGTGCCTCCTATCTACCATAGAGATGTCAAGTCCAGCAACATTCTGCTAGATATCAAGCTGAATGCCAAGGTTTCAGATTTTGGTTTGTCTAGGTTGGCTCAGACAGATATGAGTCATATCTCTACTTGTGCTCAGGGCACCCTTGGGTACCTTGATCCTGAGTATTATAGGAACTACCAATTGACTGATAAGAGTGACGTTTACAGTTTTGGGGTGGTGCTGCTTGAGCTTTTGACAGCTCAGAAGGCAATAGATTTTAACAGGGCAGCAGATGATGTGAACTTGGCGGTTTATGTGCATCGGATGGTGACCGAGGAAAAGTTGATGGATGTCATTGATCCAATGTTGAAGAATGGAGCTACCACTATAGAGCTAGAGACGATGAAGGCAGTGGCGTTTTTGGCATTGGGTTGCTTGGAGGAAAAGAGACAGAACCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATTAGTATTGCCTCAGCAAAGGTATTGGAGAAGTAG 1914 0.5251 MESTARLFLLAVLLLLLSGAPHVSPATPCPPCGNTTVPFPLSTTSACGDPSYKIRCSSSSNTLVFDTLNNSYPIESIDPKSQRLVIRPSPLLPDTCVSTDKVHQGIQLNNTLPFNITSSNTIVYLNCTLTLLQSPLNCSAASACHSYINATASASPCHSGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLNPALPVNRWPQPGLEIQWLSPKETVCGSQADCDSATSTCGPDASSSRGIKRCFCNGGLVWDPIQGVCAKKITCQNPDGCDDSSHRTAIIAGSVCGVGAALILAIIAFLLYKRHRRIKEAQARLAKEREGILNASNGGRAAKLFSGKEIKKATNDFSSDRLLGVGGYGEVYKGILQDGTVVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPIMVYEFIENGTLLDHLQGQMPKGRGLLTWNHRLQIARYTAEGLAYLHFMAVPPIYHRDVKSSNILLDIKLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRAADDVNLAVYVHRMVTEEKLMDVIDPMLKNGATTIELETMKAVAFLALGCLEEKRQNRPSMKEVAEEIEYIISIASAKVLEK 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00188 637 Gene3D Transferase(Phosphotransferase) domain 1 424 635 - -
Pumo1g00188 637 FunFam Wall-associated receptor kinase-like 20 424 636 - -
Pumo1g00188 637 Pfam Wall-associated receptor kinase galacturonan-binding 29 86 IPR025287 GO:0030247
Pumo1g00188 637 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Pumo1g00188 637 FunFam Wall-associated receptor kinase-like 20 310 423 - -
Pumo1g00188 637 CDD TM_EGFR-like 279 311 - -
Pumo1g00188 637 Pfam Protein tyrosine and serine/threonine kinase 351 622 IPR001245 GO:0004672|GO:0006468
Pumo1g00188 637 Gene3D Phosphorylase Kinase; domain 1 309 423 - -
Pumo1g00188 637 SMART serkin_6 348 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00188 637 CDD STKc_IRAK 354 624 - -
Pumo1g00188 637 ProSiteProfiles Protein kinase domain profile. 348 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00188 637 SUPERFAMILY Protein kinase-like (PK-like) 332 623 IPR011009 -
Pumo1g00188 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Pumo1g00188 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 626 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00188 Pumo-Chr1 2983913 2987261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00188 29 636 Receptor kinase-like Gene Family AT5G02070 53.859 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo1g00188 PK_Tyr_Ser-Thr 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00188 - - gmx:100305415 1157.51