Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00186 ATGGCGGAATTGGAGGAGGAGCGGATGGCGGATTTCAAGCCCTTCTCGGAGGGTTCTTCGTGCTCCCGTTCGATCAGCGAAACCGTGAACGGCTCGCACCAATTCACGATAAAGGGCTACTCTTTGGCCAAAGGGATGGGTGCGGGAAAGTACATCATGAGCGACACGTTCAGCGTTGGTGGTTACGATTGGGCTATTTACTTCTACCCCGATGGGAAGAACCCTGAGGACAATTCCATGTACGTTTCGGTTTTTATTGCGCTCGCTAGCGACGGAACCGATGTTAGGGCTCTGTTCAAGTTGACGCTGGTGGATCAGAGTGAGAAGGGGAATGATAAAGTCCATAGCCATTTCGATCGCCCCCTCGAGAGTGGACCTTATACCTTGAAGTATAGAGGCAGCATGTGGGGTTACAAACGCTTCTTCAGAAGAACACTACTGGAAACCTCTGAGTATCTAAAAGATGATTGCCTTGTAATGCATTGCACTGTTGGTGTCGTTAAAACTCGTTTTGAGGGATCTAAACAGGGTGTTATCGTGCCACAGTCAGACATGGGCCGAGATTTTAAGGACCTGTTGGAATCTGAGGTTGGTTGTGACATAGTTTTCAAAGTCAAAAGTGAAAGCTTCAAAGCTCATAAGTTGATACTTGCAGCCCGATCTCCTGTGTTTAGAGCACAGTTTTTTGGACTTGTTGGGGATCCTACCTTAGAGGAAGTAGTGGTAGAGGACATTGAGCCCTTTATCTTCAAGGCAATGCTTCTATTCATTTACTCTGACAAACTTCCTGGCATATATGAGGTTATGGACTCAATGCCCTTGTGCTCATACACTGTCATGGTGCAGCATCTCTTGGCTGCTGCTGATCTCTATAATCTTGATCGGCTCAAACTGCTTTGTGAATCAAAATTGTGTGAAGAAATCAATACTGACAATGTGGCCACGACACTTGCGCTGGCAGAGCAACACCACTGTCCACAGCTTAAGGCTATCTGTTTAAAATTTATTGCAAATCCAGCAAACTTGGGAGCTGTAATGCAGTCGGAAGGCTTTTGTGCATTTGAAAGAGAGCTGCCCCACAATGTTGTTGGAATTGCTGGAGACATTTGCATCAGTGGATGA 1122 0.4643 MAELEEERMADFKPFSEGSSCSRSISETVNGSHQFTIKGYSLAKGMGAGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIVPQSDMGRDFKDLLESEVGCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPTLEEVVVEDIEPFIFKAMLLFIYSDKLPGIYEVMDSMPLCSYTVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDNVATTLALAEQHHCPQLKAICLKFIANPANLGAVMQSEGFCAFERELPHNVVGIAGDICISG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00186 373 FunFam BTB-POZ and math domain 1 175 302 - -
Pumo1g00186 373 SUPERFAMILY POZ domain 181 306 IPR011333 -
Pumo1g00186 373 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Pumo1g00186 373 SMART math_3 35 147 IPR002083 GO:0005515
Pumo1g00186 373 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 169 IPR008974 GO:0005515
Pumo1g00186 373 MobiDBLite consensus disorder prediction 1 26 - -
Pumo1g00186 373 SUPERFAMILY TRAF domain-like 27 166 - -
Pumo1g00186 373 CDD BTB_POZ_BPM_plant 185 305 - -
Pumo1g00186 373 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 24 353 IPR045005 GO:0016567
Pumo1g00186 373 CDD MATH 31 164 IPR002083 GO:0005515
Pumo1g00186 373 Pfam BTB/POZ domain 189 306 IPR000210 GO:0005515
Pumo1g00186 373 SMART BTB_4 199 308 IPR000210 GO:0005515
Pumo1g00186 373 ProSiteProfiles BTB domain profile. 199 262 IPR000210 GO:0005515
Pumo1g00186 373 Gene3D - 303 350 - -
Pumo1g00186 373 Gene3D Potassium Channel Kv1.1; Chain A 175 302 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00186 Pumo-Chr1 2960566 2965875 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03313 5 82301387 82305722 Pumo1g00186 1 2960566 2965875 ECH
Pumo1g00186 1 2960566 2965875 Pumo1g00186 1 2960566 2965875 ECH