Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00183 ATGGCTGGAATTTGCTGTGGTGTTGTTGGTGAAGGTGACACTCCGGCTCCACTCGAGCCAACTTCCCGCCCTTCCAGGCGCCGGAGCTTGGACATCTTACCGCTAAAATACATCGCTGACAGGGCGGTGCCGCCGCCCGAGGGTTCACGGAAACGTCCCAAGCTGGATCTCAGGGACTGGGAAAACGCAATTGAAAATTGCGACGAATCCACTGGACAAAAGGTGATGAAGAAAGAAGCCAAAGTGGACAACGATGACGATGATGTTTCCGAAACAAAAACCGTAACGGTTGCGGATTCTTCTTCGGAAGTTGGAGAGTGTCCGAAGTTTGGTGTGACGTCCGTTTGCGGCAGGAGAAGAGACATGGAAGATTCCGTTTCGGTGCGGCCTTGCTTCTCCCAACGCTTCCACTACTTCGGCGTTTTCGACGGTCACGGTTGCTCTCATGTTGCGACTATGTGCAAGGAGCGGCTCCACGAGATTGTGAACGAGGAGATTTACAGCGCGAGCGACAGTTTGGAGTGGAAATTGACGATGGAGAACGGATTCGCTCGCATGGACGACGAGGTTCATCGCCGGAGCCAGAGCAACCAGACCTTCACCTGCAGGTGCGAGCTCCAGACTCCTCACTGCGACGCCGTCGGATCCACCGCCGTCGTCGCCGTCGTCACGCCGGACAAACTCGTCGTCTCGAACTGCGGCGACTCCCGCGCCGTTCTCTGCCGGAACGGCGTCGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGACCCGACGAATTGCTCCGAGTTCAATCCAAGGGAGGGCGCGTGATTTACTGGGACGGTCCGAGAGTGCTTGGTGTGTTAGCCATGTCTCGAGCCATAGGTGACAATTATCTGAAGCCGTACGTGATTTCGGAGCCGGAGGTGACGGTGACGGAACGGACCGAGGAGGATGAGTGTTTGATACTGGCGAGTGATGGGTTGTGGGATGTGGTGTCGAATGAAACGGCTTGTGGGGTGGTGAGGATGTGTCTGAAGGCGCATAAGCCGCCGTCGCCGCCGGGGTCTCCGGGGAGTGACGTGGCGGCGGATGGTTCCGACCGGGCTTGCTCCGATGCGTCGATTCTGTTGACCAAGTTGGCTTTGGCGAGGCATAGTTCGGATAATGTGAGCGTGGTGGTGGTCGATTTGAGGAGAGATCAACCACGATCATCCAATTCCAACGACGTTAATTAA 1221 0.5667 MAGICCGVVGEGDTPAPLEPTSRPSRRRSLDILPLKYIADRAVPPPEGSRKRPKLDLRDWENAIENCDESTGQKVMKKEAKVDNDDDDVSETKTVTVADSSSEVGECPKFGVTSVCGRRRDMEDSVSVRPCFSQRFHYFGVFDGHGCSHVATMCKERLHEIVNEEIYSASDSLEWKLTMENGFARMDDEVHRRSQSNQTFTCRCELQTPHCDAVGSTAVVAVVTPDKLVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQSKGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTEEDECLILASDGLWDVVSNETACGVVRMCLKAHKPPSPPGSPGSDVAADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQPRSSNSNDVN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00183 406 Pfam Protein phosphatase 2C 110 384 IPR001932 -
Pumo1g00183 406 SMART PP2C_SIG_2 121 392 IPR001932 -
Pumo1g00183 406 SMART PP2C_4 97 390 IPR001932 -
Pumo1g00183 406 FunFam Protein phosphatase 2C 37 104 399 - -
Pumo1g00183 406 CDD PP2Cc 109 343 IPR001932 -
Pumo1g00183 406 ProSiteProfiles PPM-type phosphatase domain profile. 109 392 IPR001932 -
Pumo1g00183 406 MobiDBLite consensus disorder prediction 71 93 - -
Pumo1g00183 406 Gene3D - 104 400 IPR036457 -
Pumo1g00183 406 MobiDBLite consensus disorder prediction 71 97 - -
Pumo1g00183 406 ProSitePatterns PPM-type phosphatase domain signature. 138 146 IPR000222 GO:0043169
Pumo1g00183 406 PANTHER PROTEIN PHOSPHATASE 84 392 IPR015655 GO:0004722|GO:0006470
Pumo1g00183 406 MobiDBLite consensus disorder prediction 1 30 - -
Pumo1g00183 406 SUPERFAMILY PP2C-like 105 393 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00183 Pumo-Chr1 2928500 2931157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00183 1 367 PP2C-type Phosphatase Gene Family AT3G11410 58.901 3.83e-146 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00183 K14497 - gmx:100796161 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00183 1 2928500 2931157 Pumo9g02414 9 58277402 58279703 ECH
Pumo1g00183 1 2928500 2931157 Pumo1g00183 1 2928500 2931157 ECH
Pumo1g00183 1 2928500 2931157 Pumo9g02414 9 58277402 58279703 PCT