Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g00173 | ATGGAGGAATCTCAGTACTTGTTGTGGATCAAGAGAAAACAAATCTTGAAGTCACATATTCAACAACAATTTGGAGCCGGTAACAACAACTCATCATCATCATGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCATGCAATTTCTGTAAAAGAGAGTTTAAGTCTGCTCAGGCTCTAGGGGGACACATGAATGTGCACAGGAGGGACAGGGCTAGGCTCAAACAAAGCCTTAGTCACCATAATGAAGCCCTTCAACATCATCACAAAAATGATTGTACAGTTGCAACAAACAAAGTCTCATCTTCTAGGCCATCAAATATATCCACCCAAGAAAATTGTTATCATCAGCCTACCATGTCTCCGTATTCTTCCTCAATTGGTTGGGGATCACATCACCACATGCGGTCTTCTGATTCAGAACCAAAAGGGGCAGTGAATGCAAGGGAAGAGTTTTTAAAAGGTTTGGGTTGCAATGATTATGTTGAAACAAATTTGTCTGTGGGACAAAGTTCAGTGTTTGGCCAAAAATTACCAATTGATTCATGTGGGGGCGAAGCAATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGTCTTCCTCAAGCCATGTTCAAATGATAGACACCTAACTTTTCAGTCTGCAGAATTTGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG | 774 | 0.4186 | MEESQYLLWIKRKQILKSHIQQQFGAGNNNSSSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFKSAQALGGHMNVHRRDRARLKQSLSHHNEALQHHHKNDCTVATNKVSSSRPSNISTQENCYHQPTMSPYSSSIGWGSHHHMRSSDSEPKGAVNAREEFLKGLGCNDYVETNLSVGQSSVFGQKLPIDSCGGEAISYKRSKTSMPPLPVFLKPCSNDRHLTFQSAEFVLGLKPGMEDLDLELRLGKPQKVI | 257 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g00173 | 257 | MobiDBLite | consensus disorder prediction | 108 | 132 | - | - | |
Pumo1g00173 | 257 | MobiDBLite | consensus disorder prediction | 91 | 107 | - | - | |
Pumo1g00173 | 257 | PANTHER | OS07G0101800 PROTEIN | 29 | 254 | - | - | |
Pumo1g00173 | 257 | MobiDBLite | consensus disorder prediction | 91 | 132 | - | - | |
Pumo1g00173 | 257 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 58 | 85 | IPR013087 | - | |
Pumo1g00173 | 257 | MobiDBLite | consensus disorder prediction | 139 | 158 | - | - | |
Pumo1g00173 | 257 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 60 | 80 | IPR013087 | - | |
Pumo1g00173 | 257 | SMART | c2h2final6 | 58 | 80 | IPR013087 | - | |
Pumo1g00173 | 257 | SUPERFAMILY | beta-beta-alpha zinc fingers | 55 | 85 | IPR036236 | - | |
Pumo1g00173 | 257 | Pfam | C2H2-type zinc finger | 58 | 82 | - | - | |
Pumo1g00173 | 257 | Gene3D | Classic Zinc Finger | 55 | 126 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g00173 | Pumo-Chr1 | 2833775 | 2834650 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g00173 | 29 | 151 | C2H2 Transcription Factor Family | AT2G37740 | 44.286 | 1.76e-27 | 105 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo1g00173 | zf-C2H2_6 | 2.6e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g00173 | - | - | gmx:102663477 | 474.167 |