Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00173 ATGGAGGAATCTCAGTACTTGTTGTGGATCAAGAGAAAACAAATCTTGAAGTCACATATTCAACAACAATTTGGAGCCGGTAACAACAACTCATCATCATCATGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCATGCAATTTCTGTAAAAGAGAGTTTAAGTCTGCTCAGGCTCTAGGGGGACACATGAATGTGCACAGGAGGGACAGGGCTAGGCTCAAACAAAGCCTTAGTCACCATAATGAAGCCCTTCAACATCATCACAAAAATGATTGTACAGTTGCAACAAACAAAGTCTCATCTTCTAGGCCATCAAATATATCCACCCAAGAAAATTGTTATCATCAGCCTACCATGTCTCCGTATTCTTCCTCAATTGGTTGGGGATCACATCACCACATGCGGTCTTCTGATTCAGAACCAAAAGGGGCAGTGAATGCAAGGGAAGAGTTTTTAAAAGGTTTGGGTTGCAATGATTATGTTGAAACAAATTTGTCTGTGGGACAAAGTTCAGTGTTTGGCCAAAAATTACCAATTGATTCATGTGGGGGCGAAGCAATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGTCTTCCTCAAGCCATGTTCAAATGATAGACACCTAACTTTTCAGTCTGCAGAATTTGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 774 0.4186 MEESQYLLWIKRKQILKSHIQQQFGAGNNNSSSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFKSAQALGGHMNVHRRDRARLKQSLSHHNEALQHHHKNDCTVATNKVSSSRPSNISTQENCYHQPTMSPYSSSIGWGSHHHMRSSDSEPKGAVNAREEFLKGLGCNDYVETNLSVGQSSVFGQKLPIDSCGGEAISYKRSKTSMPPLPVFLKPCSNDRHLTFQSAEFVLGLKPGMEDLDLELRLGKPQKVI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00173 257 MobiDBLite consensus disorder prediction 108 132 - -
Pumo1g00173 257 MobiDBLite consensus disorder prediction 91 107 - -
Pumo1g00173 257 PANTHER OS07G0101800 PROTEIN 29 254 - -
Pumo1g00173 257 MobiDBLite consensus disorder prediction 91 132 - -
Pumo1g00173 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Pumo1g00173 257 MobiDBLite consensus disorder prediction 139 158 - -
Pumo1g00173 257 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Pumo1g00173 257 SMART c2h2final6 58 80 IPR013087 -
Pumo1g00173 257 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Pumo1g00173 257 Pfam C2H2-type zinc finger 58 82 - -
Pumo1g00173 257 Gene3D Classic Zinc Finger 55 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00173 Pumo-Chr1 2833775 2834650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00173 29 151 C2H2 Transcription Factor Family AT2G37740 44.286 1.76e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo1g00173 zf-C2H2_6 2.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00173 - - gmx:102663477 474.167