Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00171 ATGGCGAATAGATGGTGGGCTGGGAATGTGGGAATGATAAGAGAGCAAGAGTTGATGGACAATAACAACAACAACAACAACAACGCCAACACTACTACTACTCCGACGAATAGCAGCAACAGCAACACGAACGCCAACACCAACACGAACACGACCGAGGAAGAGGTGAGCAGGGACAACGGCGAGGACCAGAACCAAAACCTCGGCAGCCACGAAGGGTCCGAGCCCGGAAGCAGCGGTCGGAGGCAACGTGGCAGGCCACCGGGGTCCAAGAACAAGCCCAAGCCACCTATAGTCATAACCAAGGAAAGCCCCAACGCGCTCCGAAGCCACGTGCTGGAAATCGCCTCCGGCAGCGACGTCGCCGAGACCATCGCCGCCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGGAGTGGCATTGTCACCAACGTCACTCTCCGCCAACCCGCCGCCCCCGCCGGCGTCATAACCCTCCACGGAAGGTTCGAGATACTCTCCCTCTCGGGAGCCTTTTTGCCGTCCCCCTCGCCGCCCGGCGCCACCGGACTGACTGTGTACTTGGCCGGCGGGCAGGGGCAGGTTGTCGGTGGCTCCGTGGCGGGCTCGCTCATGGCCTCCGGGCCGGTGATGGTGATCGCAGCCACCTTTGCTAATGCCACTTATGAGAGGTTGCCACTAGAGGATGAGCAAGGTGAGGAGGAAATGCAAGTGCAACAGCAACAGCAACAGCAACAGCTACAATCTCAAGGTTTGGGAGAACAGGTTTCAATGCCTATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGTTCTGGGGAGCTCCACCTCGCCCTCCTCCTTCCTTCTGA 882 0.5873 MANRWWAGNVGMIREQELMDNNNNNNNNANTTTTPTNSSNSNTNANTNTNTTEEEVSRDNGEDQNQNLGSHEGSEPGSSGRRQRGRPPGSKNKPKPPIVITKESPNALRSHVLEIASGSDVAETIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGSVAGSLMASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQQQQQQLQSQGLGEQVSMPMYNLPPNLLHNGQNMPHDVFWGAPPRPPPSF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00171 293 MobiDBLite consensus disorder prediction 19 54 - -
Pumo1g00171 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 221 IPR005175 -
Pumo1g00171 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 285 IPR014476 GO:0003680
Pumo1g00171 293 MobiDBLite consensus disorder prediction 232 255 - -
Pumo1g00171 293 MobiDBLite consensus disorder prediction 19 105 - -
Pumo1g00171 293 MobiDBLite consensus disorder prediction 62 76 - -
Pumo1g00171 293 CDD DUF296 109 220 IPR005175 -
Pumo1g00171 293 FunFam AT-hook motif nuclear-localized protein 108 236 - -
Pumo1g00171 293 ProSiteProfiles PPC domain profile profile. 105 242 IPR005175 -
Pumo1g00171 293 PIRSF ESCAROLA 16 292 IPR014476 GO:0003680
Pumo1g00171 293 MobiDBLite consensus disorder prediction 239 255 - -
Pumo1g00171 293 Gene3D - 108 250 - -
Pumo1g00171 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00171 Pumo-Chr1 2811024 2812293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00171 1 293 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.380 3.25e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00171 - - gmx:100791954 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00171 1 2811024 2812293 Pumo1g00171 1 2811024 2812293 ECH
Pumo1g00171 1 2811024 2812293 Pumo9g02417 9 58333015 58334832 PCT