Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00166 ATGGCTTCAAATTCCTTGAACAATAATAACAAAGAATATTTTCCCTCTTGGACAAGATTGCAGAACAAACAATTTGAAAGGGCATTGGTCTTGTACGATGAACACACCCAAGATCGGTGGCAAAATATAGCCAAAGAAGTTGGCAATAAATCGGTGGAGGAAGTGAAGAGACACTATGCAATTCTTTTAGAAGATCTTAGTAGAATAGAGTCGGGGCGTGTTCCAATTCCCGATTATAAGTTATCAGAAAACATGGATGATGATTGA 267 0.3783 MASNSLNNNNKEYFPSWTRLQNKQFERALVLYDEHTQDRWQNIAKEVGNKSVEEVKRHYAILLEDLSRIESGRVPIPDYKLSENMDDD 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00166 88 ProSiteProfiles SANT domain profile. 12 59 IPR017884 -
Pumo1g00166 88 FunFam Transcription factor SRM1 9 76 - -
Pumo1g00166 88 Gene3D - 14 76 - -
Pumo1g00166 88 SMART sant 13 65 IPR001005 -
Pumo1g00166 88 CDD SANT 16 59 IPR001005 -
Pumo1g00166 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 83 IPR044636 GO:0003700
Pumo1g00166 88 SUPERFAMILY Homeodomain-like 16 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00166 Pumo-Chr1 2744914 2745180 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo1g00166 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00166 - - gmx:100785957 154.066