Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00164 ATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACAGATGCAGCCGATTCGTGCACATCTGGTGCCAGGACACCGTGGTTTGTCCCGAATGCGACGGCGGATTCATCGAAGAAATCGAACACCCGCCCCGCTCCGTCCACCTCGACCCCCGCCGCCGCCGCTTCCCGCCAGCCGCCATGTACATGATCGGCCAACGCCCATCCTCCGACCATGCCTCCCGCCCCGCCTCCCTCCGCCGCACCCGCCGCAACGGCGGCGACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGTGGTGCCGCAGCCGCCGCCGCCGCGGAAGACGAAAGTCGCGGCTTTGAACTCTTCTACGACGACGGTGCCGGTTCCGGCCTCAGACCCTTGCCACCGAGCATGTCAGAGTTTCTCCTCGGATCTGGTTTCGACAGGCTCCTGGAACAACTCTCTCAGATTGAGATCAACGGTATTGGAAGGTACGAGCACCCTCCTGCGTCAAAAGCAGCCATTGATTCATTACCAACCATCGAAATTGATGACACTCATCTAGCCATGGAGTCACACTGCGCGGTTTGCAAGGAAGCCTTTGAATTAGGAACCGCGGTGAGGGAGATGCCATGTAAGCTCATATACCACCCTGAATGCATATTACCATGGCTTGCACTTCACAATTCTTGCCCCGTTTGTCGCCACGAGTTACCTGCGGATACTCCGAATCCAACACAAGGACAAGGACAAAATGTTTCCTTAAACGAGGACGAGAATGTGGGGTTAACTATTTGGAGGTTGCCCGGTGGAGGGTTTGCAGTTGGGAGATTTTCCGGTGGGAGAAGAGGTGCTGAGAGAGAGCTTCCTGTGGTTTACACTGAGATGGATGGTGGGTTTAACAATGGGGGTGAACCGAGGAGGATTTCATGGTCTTCTAGAGGGAATAGAGGGAGGGAGAGTGGAGGGTTGAACAGGTTTTTCCGCAATTTCTTTGGTTGCTTCAGAGGTGGTGTTGGAGGAACTAGTGGTGCTACTCAGCGTTCTGCTTCTAGTAGAGAGTCTATGAGGGCTAGTTCATCTCGGTCTAGTATGGATCCTTCGCCTCGTTCGCGCAGGACCTGGTCAATGGATGTAAACAGTGGGATGAGAGCATGGTAA 1146 0.5558 MMSSGTSSYWCYRCSRFVHIWCQDTVVCPECDGGFIEEIEHPPRSVHLDPRRRRFPPAAMYMIGQRPSSDHASRPASLRRTRRNGGDRSPFNPVIVLRGGAAAAAAAEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKLIYHPECILPWLALHNSCPVCRHELPADTPNPTQGQGQNVSLNEDENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGLNRFFRNFFGCFRGGVGGTSGATQRSASSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00164 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Pumo1g00164 381 MobiDBLite consensus disorder prediction 337 373 - -
Pumo1g00164 381 Pfam Ring finger domain 188 230 IPR001841 -
Pumo1g00164 381 CDD RING-H2_RNF126-like 189 230 - -
Pumo1g00164 381 Pfam Protein of unknown function (DUF1117) 256 360 IPR010543 -
Pumo1g00164 381 SUPERFAMILY RING/U-box 169 240 - -
Pumo1g00164 381 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Pumo1g00164 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 234 - -
Pumo1g00164 381 MobiDBLite consensus disorder prediction 64 90 - -
Pumo1g00164 381 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Pumo1g00164 381 FunFam E3 ubiquitin-protein ligase RING1-like 151 236 - -
Pumo1g00164 381 MobiDBLite consensus disorder prediction 337 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00164 Pumo-Chr1 2717851 2720440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00164 128 244 C3H Transcription Factor Family AT5G01980 39.316 2.01e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00164 K11982 - gmx:100807324 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00164 1 2717851 2720440 Pumo1g00164 1 2717851 2720440 ECH