Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00162 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAACGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTATTCATGATACTGAACTCCCACCAGATGTCCCCAAACTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCCCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACAGAATTGAGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACCGAAGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAGTAGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGTCTCTGACGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAATTGCATCGATCCTTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGTTGGAGTGACGATGGACATAATGATATCGCGGACATGGTTTGA 819 0.4542 MSFVFRGTRADIENGFPGFIPERRALRVHATRPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQSSSSMQQASSSTPAEKKQDNSNAVGSMKVSDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWSDDGHNDIADMV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00162 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 258 IPR013083 -
Pumo1g00162 272 CDD RING-H2_PA-TM-RING 211 253 - -
Pumo1g00162 272 SUPERFAMILY RING/U-box 207 256 - -
Pumo1g00162 272 SMART ring_2 212 252 IPR001841 -
Pumo1g00162 272 MobiDBLite consensus disorder prediction 172 202 - -
Pumo1g00162 272 Pfam Ring finger domain 211 253 IPR001841 -
Pumo1g00162 272 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Pumo1g00162 272 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00162 Pumo-Chr1 2699339 2704241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00162 1 272 C3H Transcription Factor Family AT3G55530 77.174 1.10e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00162 K16283 - gmx:100777936 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00162 1 2699339 2704241 Pumo1g00162 1 2699339 2704241 ECH