Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00153 ATGGCCACGGTCCATATCATCGTCATTGTCTCCCTCTTGGCCTTACTCGCTCCATCCCACGCCAAAATTCCCGGCGTCTATTCCGGTGGGCCATGGCAAAGCGCTCACGCCACTTTCTACGGTGGCAGCGACGCCTCAGGAACTATGGGTACGGTGCCTTGCCGGAAACAGGGAGGGATGAGGTTCACGATCAACGGGTTCCGTTACTTCAACTTGGTTTTGATCACCAGCGTGGCGGGTGCAGGGGATATCATGAGGGCGAGCGTGAAAGGGTCAAAGACGGAGTGGATGAGCATGAGCCGTAACTGGGGGCAGAACTGGCAATCAAACGCAGTTCTGGTTGGTCAGTCACTGTCCTTCAGGGTCACAGGCAGTGACCGACGCACCTCCACCTCCTGGAACATTGTCCCACCTAATTGGCAATTTGGCCAAACCTTCGCGGGGAAGAATTTTAGAATCTAA 462 0.5519 MATVHIIVIVSLLALLAPSHAKIPGVYSGGPWQSAHATFYGGSDASGTMGTVPCRKQGGMRFTINGFRYFNLVLITSVAGAGDIMRASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPPNWQFGQTFAGKNFRI 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00153 153 PRINTS Expansin/Lol pI family signature 96 110 IPR007118 GO:0005576
Pumo1g00153 153 PRINTS Expansin/Lol pI family signature 134 148 IPR007118 GO:0005576
Pumo1g00153 153 PRINTS Expansin/Lol pI family signature 42 58 IPR007118 GO:0005576
Pumo1g00153 153 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 69 148 IPR007117 -
Pumo1g00153 153 FunFam Expansin 59 151 - -
Pumo1g00153 153 SUPERFAMILY PHL pollen allergen 56 147 IPR036749 -
Pumo1g00153 153 Pfam Expansin C-terminal domain 60 137 IPR007117 -
Pumo1g00153 153 PANTHER EXPANSIN-A15 17 50 IPR002963 GO:0009664
Pumo1g00153 153 Gene3D - 60 151 IPR036749 -
Pumo1g00153 153 PRINTS Expansin signature 70 91 IPR002963 GO:0009664
Pumo1g00153 153 PRINTS Expansin signature 134 150 IPR002963 GO:0009664
Pumo1g00153 153 PRINTS Expansin signature 105 126 IPR002963 GO:0009664
Pumo1g00153 153 PRINTS Expansin signature 58 70 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00153 Pumo-Chr1 2534476 2535880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00153 4 50 Expansin Gene Family AT2G39700 57.447 9.29e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00153 - - gmx:100812894 207.994