Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00147 ATGGCTATTGGGTTCATGGAGGTGCAGCTTGTGAAAGCAAAGGAGTTGTGTGACACTGATACCTTTGGTAGTATGGATCCGTATGTTGTGATACAATACAACGGCCAAGAGCAAAGGAGTAGTGTTGCTAAGGGACAGGGCAATAATCCGGTATGGAATGAGAAATTTGTGTTCAAGGTAGAATATCCTACACCAAGTAACTCATACAAGATCATCTTAAAAATCATGGACAAGGATTTGTTATCTGCAGATGACTTCGTTGGTCAAGCCACAGTCTATGTAGAAGATTTATTAGCCATAGGGGTAGAGGATGGTGCAGCTGAGCTACAACCTCTCAAGTACAGAGTAATTCGTGCAGATCAATCTTATTGTGGGGAAATTGATGTTGGTGTAACTTTTAAGGTGGAAGAAGAGTTCAATGGAGAAGCTAAACGAGGATGGAAGGACAGTAACTAG 456 0.4167 MAIGFMEVQLVKAKELCDTDTFGSMDPYVVIQYNGQEQRSSVAKGQGNNPVWNEKFVFKVEYPTPSNSYKIILKIMDKDLLSADDFVGQATVYVEDLLAIGVEDGAAELQPLKYRVIRADQSYCGEIDVGVTFKVEEEFNGEAKRGWKDSN 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00147 151 PANTHER C2 DOMAIN-CONTAINING 3 136 - -
Pumo1g00147 151 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Pumo1g00147 151 Pfam C2 domain 6 103 IPR000008 -
Pumo1g00147 151 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 133 IPR035892 -
Pumo1g00147 151 Gene3D C2 domain 2 135 IPR035892 -
Pumo1g00147 151 SMART C2_3c 5 106 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00147 Pumo-Chr1 2433862 2435523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00147 3 109 C2H2 Transcription Factor Family AT4G21160 33.645 2.11e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00147 - - gmx:100526962 289.271