Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00146 ATGGGTTGCTTCTTTAGTGTATCTTCAAAGATCAAAGCTGAGAGCCCTCCACGTAACGGTTTGAATTCAAAGGATGGTAACAAAGAAGAGAATGATTTAAGCAGCAAGGTGTCCTCTTCAGCTATGCTTCTAACTCCTCAGAGTGAGGATGAGATATTGCAGTCCAGCAATTTGAAGAACTTCACATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCGGATAGTATGGTGGGTGAAGGCGGGTTTGGTTCTGTGTTTAAGGGGTGGATTGATGAGCAGACACTTGCCCCTACTAAACCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAACCAGGGACACATTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAACTAATTGGTTACTCCTTAGAGGATGATCACCGGATTTTGGTGTATGAATTTGTGGCCAAGGGTAGTTTGGATAATCACTTGTTCAGGAGGGCTTCTTACTTTCAACCACTCTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATATAGGGACTTCAAAACTTCAAATATCTTACTTGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAAATGGACCAGAAGGTGACAAGAGCCATGTCTCTACAAGGGTAATGGGCACCTTTGGCTATGCAGCTCCTGAGTATATAGCCACAGGTCACCTAACCAAAAAGAGTGACATATACAGTTTTGGAGTTGTTCTTCTGGAACTTATGTCAGGGAAACGTGCACTAGATGACAACAGGCCAAGCGGGGAGCGTAATTTAGTTGAATGGGCCAAACCACTCCTCATCAACAAACACAAGATCTCCCAAGTTATGGATGCCCGCATAGAAGGCCAATACCCAAAGCGAGAAGCTAAGAGAATAGCTCACCTTGCAATTCAATGCCTATCTACGGAACAAAAACTTAGACCAAACATAGATGATGTGGTAAGATCATTGGAACATCTTCACGATTCCAAAGACACAGATATAAATGGTCTTAGCTCAAGCTGCAGTGGTACTCCTAATCCAAGTTTATCTCCTTCTCCTCTTCGTACATAG 1167 0.4284 MGCFFSVSSKIKAESPPRNGLNSKDGNKEENDLSSKVSSSAMLLTPQSEDEILQSSNLKNFTFNELRTATRNFRPDSMVGEGGFGSVFKGWIDEQTLAPTKPGTGMVIAVKRLNQESNQGHIEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYIATGHLTKKSDIYSFGVVLLELMSGKRALDDNRPSGERNLVEWAKPLLINKHKISQVMDARIEGQYPKREAKRIAHLAIQCLSTEQKLRPNIDDVVRSLEHLHDSKDTDINGLSSSCSGTPNPSLSPSPLRT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00146 388 Gene3D Transferase(Phosphotransferase) domain 1 159 373 - -
Pumo1g00146 388 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00146 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Pumo1g00146 388 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Pumo1g00146 388 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Pumo1g00146 388 MobiDBLite consensus disorder prediction 365 388 - -
Pumo1g00146 388 Pfam Protein tyrosine and serine/threonine kinase 77 355 IPR001245 GO:0004672|GO:0006468
Pumo1g00146 388 MobiDBLite consensus disorder prediction 1 39 - -
Pumo1g00146 388 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Pumo1g00146 388 MobiDBLite consensus disorder prediction 363 388 - -
Pumo1g00146 388 FunFam Probable serine/threonine-protein kinase PBL8 159 373 - -
Pumo1g00146 388 FunFam Serine/threonine-protein kinase BIK1 39 158 - -
Pumo1g00146 388 CDD STKc_IRAK 79 358 - -
Pumo1g00146 388 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00146 Pumo-Chr1 2425875 2429676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00146 1 367 Glycoside Hydrolase AT3G07070 43.501 3.97e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo1g00146 PK_Tyr_Ser-Thr 8.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00146 - - gmx:106795104 720.694