Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00142 ATGAGAAAACCTTGTTGTGACAAAGAAGCCACAAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTTATTGAGTACCTCCGAGCTCATGGTGCAGGACGTTGGTGTTCCCTTCCCAAGGCTGCAGGACTAGATCGTTGTGGGAAAAGCTGTAGGTTGCGATGGAAAAACTATTTACGACCAAACATTAAACGCGGCAACTTTGCGGAGGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTCATAGCTGGAAGGTTGCCGGGTCGTACAGATAACGAGGTGAAGAACTATTGGAATTGTCATATACGCAGAAAGTTAATTAAGATGGGAATTGATCCAAATAACCACAAGCTCCCTGTTCCACAATCATCATCTGGCTCCATGGATAGAGTACCTTTCATCAAATTCCATGATACTTGTCATTGTAGAAGAAGCATCCCACTTAAATCTTGA 480 0.4458 MRKPCCDKEATNKGAWSKQEDQKLIEYLRAHGAGRWCSLPKAAGLDRCGKSCRLRWKNYLRPNIKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNCHIRRKLIKMGIDPNNHKLPVPQSSSGSMDRVPFIKFHDTCHCRRSIPLKS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00142 159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pumo1g00142 159 FunFam MYB-related transcription factor 12 65 - -
Pumo1g00142 159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pumo1g00142 159 CDD SANT 68 111 IPR001005 -
Pumo1g00142 159 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pumo1g00142 159 Gene3D - 68 138 - -
Pumo1g00142 159 CDD SANT 15 60 IPR001005 -
Pumo1g00142 159 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Pumo1g00142 159 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pumo1g00142 159 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pumo1g00142 159 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Pumo1g00142 159 Gene3D - 13 65 - -
Pumo1g00142 159 FunFam MYB transcription factor 67 128 - -
Pumo1g00142 159 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 125 - -
Pumo1g00142 159 SMART sant 65 113 IPR001005 -
Pumo1g00142 159 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00142 Pumo-Chr1 2408152 2409562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00142 2 141 MYB Transcription Factor Family AT4G38620 71.429 1.11e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g00142 Myb_DNA-binding 4.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00142 K09422 - gmx:100793444 249.21