Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00134 ATGGAGAGTCCCCATTCACTTTCTCCCTCTTCCTCGTCCTCTTACTCCTCCGACGGTGTCGGTTTCGAGACGGAGGAGCCGCGGACGCCGATGGCCGTGCGCCGCGCGCTGCAGCTCCTCAACTCCGGCGAACCGGACCTGCGCCTCCAAGCCGCTCGCGACATCCGGCGGCTCACCAAAACATCACAGCGTTGTCGGCGCAAGTTATCCGAGGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAATCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAAGACGAAAAGAATAAAATCAATATTGTGGAGGCCGGTGCATTAGAACCAATAATTAGTTTCCTCAAGTCTCAAAATCCAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGTGCCATTCCTCTTCTTGTGGAGATCCTCAGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACCCTAACAATCTCAGTGTCATTCTCGAGACAAACCCAATCCCTTTCATAGTTGATCTTCTTAAAACCTGTAAAAAATCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAATCCTTGGTGGATTATGACGAGGGCAGAACTGCCTTGACATCTGAGGAAGGTGGGGTTCTTGCAGTGGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGACACAAATACCGGGAACCAATTCTAAGAGAAGGTGTCATTCCGGGACTTCTTGAGCTTACTGTTCAAGGAACACCAAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTGCTGAGAGAGTCTCCTTATCCTAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTTTGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAGGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCTCTCGTATGCACCCCAAGTGATCTGCCTATAGCTAGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1164 0.488 MESPHSLSPSSSSSYSSDGVGFETEEPRTPMAVRRALQLLNSGEPDLRLQAARDIRRLTKTSQRCRRKLSEAVGPLVSMLRVDSPESHESALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNPNLQESATASLLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTHPNNLSVILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRHKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIASCASEVSSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00134 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Pumo1g00134 387 MobiDBLite consensus disorder prediction 1 20 - -
Pumo1g00134 387 PANTHER U BOX DOMAIN-CONTAINING 21 316 - -
Pumo1g00134 387 FunFam U-box domain-containing protein 4 18 369 - -
Pumo1g00134 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Pumo1g00134 387 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Pumo1g00134 387 SMART arm_5 102 142 IPR000225 GO:0005515
Pumo1g00134 387 SMART arm_5 143 183 IPR000225 GO:0005515
Pumo1g00134 387 SMART arm_5 184 226 IPR000225 GO:0005515
Pumo1g00134 387 SMART arm_5 228 268 IPR000225 GO:0005515
Pumo1g00134 387 SMART arm_5 59 100 IPR000225 GO:0005515
Pumo1g00134 387 MobiDBLite consensus disorder prediction 1 28 - -
Pumo1g00134 387 SUPERFAMILY ARM repeat 34 335 IPR016024 -
Pumo1g00134 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Pumo1g00134 387 Gene3D - 22 371 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00134 Pumo-Chr1 2340653 2344768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00134 33 310 U-box Gene Family AT2G23140 34.286 4.34e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00134 - - gmx:100809684 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00134 1 2340653 2344768 Pumo1g00134 1 2340653 2344768 ECH
Pumo1g00134 1 2340653 2344768 Pumo9g02447 9 58763583 58767163 PCT