Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00133 ATGGTAGCTGATAGATTGGCTAGCTTTGCTTTAGAATCAAAAGAAATGTACTGGTTGGAGGACTTTCCACACCAGATTGCAGATTCTATTCTTTTGGATAAGAAGGAAGATGGCTCACAAACTACTAATGGTCTCAGCAATGATTCAGCTATATCACATTCTCCTCCTCTATGTGGCAGTGGCAAAGGGTATGCTTATAAGGGCACAAACTATCAGCTTGAACAAGCAGAATCTCTGATTAATTTCAAAGGGTATAGCAATCTTATGCAAGGTGGTGGATCTTTACTTAGCTTTCAGCAGAACAGACTGGTCCCTAACGACTGTTACTTGAAAGATAATGGTCAGAAAGAGTACTGTGTTTGGGAGAATAATTTGCATCAAGGCCATAACCACTGGGATCAGACTAGTCCAAGAAGCAGTAGAGACATGCGCCTGGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTGGCTATAGCTCCATAGTCAATAATGCAAAAGAGAAGCTACATGGCCAAAGTTCATCTGGATGGCTCTACTCAGCACCAACTATCCCTAATGACAGTAGCCTCCACAAGTTAGAAGCACAAGAATCAGTTTTGCAAAAGCGCCCTTCAATGGGGGAGAACATGAAAGCTGCCAAGAAACAATGCTCAACTGAGTGTAAAACGACAAAACATAAGTCGAGCCCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGAACCGAAGAGAGAGGATAAGCGAGCGGTTGAAGATACTACAAGAACTGGTGCCTAATGGCTCCAAGGTGGTTGATTTGGTTACTATGCTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAACTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCTTTCATCACAAAGAGAGAGAAGTTCAAGCTCAAAGTAG 978 0.4254 MVADRLASFALESKEMYWLEDFPHQIADSILLDKKEDGSQTTNGLSNDSAISHSPPLCGSGKGYAYKGTNYQLEQAESLINFKGYSNLMQGGGSLLSFQQNRLVPNDCYLKDNGQKEYCVWENNLHQGHNHWDQTSPRSSRDMRLVQDFNCFQTASGYSSIVNNAKEKLHGQSSSGWLYSAPTIPNDSSLHKLEAQESVLQKRPSMGENMKAAKKQCSTECKTTKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEVIDAILSSQRERSSSSK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00133 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983
Pumo1g00133 325 Pfam Helix-loop-helix DNA-binding domain 240 281 IPR011598 GO:0046983
Pumo1g00133 325 FunFam Transcription factor bHLH83 228 288 - -
Pumo1g00133 325 CDD bHLH_AtIND_like 231 294 - -
Pumo1g00133 325 SMART finulus 236 286 IPR011598 GO:0046983
Pumo1g00133 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 290 IPR036638 GO:0046983
Pumo1g00133 325 MobiDBLite consensus disorder prediction 214 243 - -
Pumo1g00133 325 Gene3D - 229 292 IPR036638 GO:0046983
Pumo1g00133 325 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 120 289 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00133 Pumo-Chr1 2297803 2301013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00133 62 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.444 9.46e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g00133 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00133 - - gmx:100810010 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00133 1 2297803 2301013 Pumo1g00133 1 2297803 2301013 ECH
Pumo1g00133 1 2297803 2301013 Pumo9g02448 9 58787298 58788721 PCT