Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00127 ATGGAGAACTTGTTGGGTTTGCTGAGAATTCATGTTGAGAAAGGTGTCAATCTTGCCATCAGGGATGTGGTGAGCAGTGACCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGCTGAAGACTCGGGTAGTCAAGAAGAATCTAAATCCTGCATGGAATGATGACTTGACCTTGTCTATTTCAGACCCTCATGCTCCAATCCATCTACATGTGTATGACAAGGACACATTTAGCTTGGATGACAAAATGGGGGATGCTGAGTTTTTCATAGGTCCATTTATTGAAGCAGTAAAGATGCGCTTGGCAGGTCTCCCCAACAATACTATAGTTACAAAAGTGCTACCTAGCAGACAAAACTGCTTAGCTGAAGAGAGTCACATTGTGTGGGAGGATGGCAAGGTTGTCCAAAAGATGGTTCTTAGACTAAGAAATGTTGAGAGTGGGGAAGTGGAGCTCAAGTTGCATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 498 0.4357 MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVKKNLNPAWNDDLTLSISDPHAPIHLHVYDKDTFSLDDKMGDAEFFIGPFIEAVKMRLAGLPNNTIVTKVLPSRQNCLAEESHIVWEDGKVVQKMVLRLRNVESGEVELKLHWIDIPGSRHL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00127 165 Gene3D C2 domain 4 161 IPR035892 -
Pumo1g00127 165 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Pumo1g00127 165 CDD C2_ArfGAP 5 148 - -
Pumo1g00127 165 Pfam C2 domain 6 88 IPR000008 -
Pumo1g00127 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Pumo1g00127 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Pumo1g00127 165 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00127 Pumo-Chr1 2237692 2240000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00127 38 165 C2H2 Transcription Factor Family AT1G70790 57.692 5.80e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00127 - - gmx:100793531 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00127 1 2237692 2240000 Pumo6g02946 6 69884825 69887915 ECH
Pumo1g00127 1 2237692 2240000 Pumo1g00127 1 2237692 2240000 ECH