Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00118 ATGGGAAGGCAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGGGCTGTCCCTAAGCTAGCAGGGCTGTTAAGGTGTGGCAAAAGTTGCAGGCTCAGATGGACAAATTACCTGAGGCCAGACCTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACACACAAGTCACTTTCCAGCACAACTGAGCAAACTCAAGCCCAACCAGATCAACAATCCCATGAACCATTGCAAGAACAACAACAACAACAACATCAGCAACAATCTATCCCAGTTGAGCAGGACCCCAAATTTGAACCTGAAAATGAGCAAAACAAGGAGCCAGAGAAGCCACAGACTTCAATTGAATCATCAATCATCACTGAAGAAGCCAAGGAAGAAGACCAAATTATGACACCCCTATTTGACTCATGGGAATTAATGAATGAGTTCTGCACTGATGAAGTTCCCATAATAGAACCAAATGAGATTCTAGTTCCCTCTGCTCCATCCACTTCACCAACCACTACATCATCTTCAACATCAACATCTTCATGTTCAAATTCATCCAACTTCCTTGAAGACCTGCTGCTCCCAGATTTTGACTGGTCTGATGATCACAATGATACTAATTTTGACAATAACAATAGCAGCATGGCCTTGTGGGATGATGACTTTATTAGAAGTTGGAATTTGCTTATTAATGATGATGTTGATGGTGATGGTGACAGAAAGCAAGTGTTTGACGCTCCTATCAATCAGTACCCAAGAGTGATCATGGATTCAGATTCTTGGGCCTATGGGTTGTTTTGA 1005 0.4239 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSSTTEQTQAQPDQQSHEPLQEQQQQQHQQQSIPVEQDPKFEPENEQNKEPEKPQTSIESSIITEEAKEEDQIMTPLFDSWELMNEFCTDEVPIIEPNEILVPSAPSTSPTTTSSSTSTSSCSNSSNFLEDLLLPDFDWSDDHNDTNFDNNNSSMALWDDDFIRSWNLLINDDVDGDGDRKQVFDAPINQYPRVIMDSDSWAYGLF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00118 334 Gene3D - 71 116 - -
Pumo1g00118 334 SMART sant 66 114 IPR001005 -
Pumo1g00118 334 SMART sant 13 63 IPR001005 -
Pumo1g00118 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo1g00118 334 CDD SANT 16 61 IPR001005 -
Pumo1g00118 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo1g00118 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo1g00118 334 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pumo1g00118 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo1g00118 334 MobiDBLite consensus disorder prediction 127 164 - -
Pumo1g00118 334 Gene3D - 11 67 - -
Pumo1g00118 334 MobiDBLite consensus disorder prediction 229 253 - -
Pumo1g00118 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo1g00118 334 FunFam MYB transcription factor 11 67 - -
Pumo1g00118 334 MobiDBLite consensus disorder prediction 127 199 - -
Pumo1g00118 334 FunFam Myb transcription factor 71 133 - -
Pumo1g00118 334 CDD SANT 74 112 IPR001005 -
Pumo1g00118 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo1g00118 334 MobiDBLite consensus disorder prediction 230 253 - -
Pumo1g00118 334 MobiDBLite consensus disorder prediction 167 181 - -
Pumo1g00118 334 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00118 Pumo-Chr1 2047449 2050066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00118 1 334 MYB Transcription Factor Family AT5G16600 46.575 4.47e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g00118 Myb_DNA-binding 9.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00118 K09422 - gmx:100803624 556.599