Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00117 ATGGCGAAAACAAAACTAACCTTAATCTCCTTCGCCACGTTCTTTGTTCTTTGTCTCTCTTCCCCAGCGGACTTTTTCCTCTACGGCGGGTGCACGCAGCAACGGTACACCTCCAACTCGGCCTACGAGTCGAACCTCAACTCGCTCCTCACCTCGCTGGTCAACTCGGCCACCTACTCCTCCTACAACAACCTCACCGTGGTGGGCTCCAGCCCCAGCGACGTCGTATACGGCCTCTACCAGTGCCGCGGCGACCTCGCCATGCCGGACTGCGCCGCCTGCGTGGCCCGCGCAGTCTCCCGCGCCGGGCAGCTCTGCCCTGGGGCGTGCGGCGGAGCGGTCCAGCTCGACGGCTGCTTCGTGAAGTACGACAATGTGACGTTCCTGGGAGTGGAGGACAAGACGGTGGTGCTGAAGAGGTGTGGGCCATCGGTGGGGTTCGGGTCGGGTGCGATGGGCGAGAGGGATGCGGTGCTGGGCGGGTTGGCGGGTTCGGGTGGGTATTTTCGGGTTGGCGGGTCGGGAGAGGTGAAGGGTGTGGCGCAGTGTTGTGGGGATTTGAGCTTCGCGGAGTGTCAGGATTGCGTGGGGGATGCGATCAAACGGCTGAGAAGTGAGTGTGCTGCTGCGGACTATGGGGACGTGTTCTTGGGGAAGTGTTACGCTAGGTTCTCCACCAATGGGGCACATGCTTACAACAAGGCCCATGGTAAATCGGGCAACGAAGGTGAAAAGACATTTGCAATAATTGTTGGATTATTAGCCGGGGTAGCTATACTCATTATTTTCCTTGCTTTCTTGAGAAGGATTTGTGAGGGACAGGGTAAATACCACATTAATTTTTTTTTTCTCTCGTTTCTCTTTTATTTAATTAATTAG 879 0.5643 MAKTKLTLISFATFFVLCLSSPADFFLYGGCTQQRYTSNSAYESNLNSLLTSLVNSATYSSYNNLTVVGSSPSDVVYGLYQCRGDLAMPDCAACVARAVSRAGQLCPGACGGAVQLDGCFVKYDNVTFLGVEDKTVVLKRCGPSVGFGSGAMGERDAVLGGLAGSGGYFRVGGSGEVKGVAQCCGDLSFAECQDCVGDAIKRLRSECAAADYGDVFLGKCYARFSTNGAHAYNKAHGKSGNEGEKTFAIIVGLLAGVAILIIFLAFLRRICEGQGKYHINFFFLSFLFYLIN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00117 292 ProSiteProfiles Gnk2-homologous domain profile. 129 229 IPR002902 -
Pumo1g00117 292 Pfam Salt stress response/antifungal 174 226 IPR002902 -
Pumo1g00117 292 Pfam Salt stress response/antifungal 31 125 IPR002902 -
Pumo1g00117 292 ProSiteProfiles Gnk2-homologous domain profile. 24 128 IPR002902 -
Pumo1g00117 292 FunFam cysteine-rich repeat secretory protein 3 23 128 - -
Pumo1g00117 292 Gene3D - 157 228 IPR038408 -
Pumo1g00117 292 Gene3D - 24 128 IPR038408 -
Pumo1g00117 292 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 7 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00117 Pumo-Chr1 2011067 2014103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00117 26 225 Pollen Coat Proteome AT4G20670 26.484 8.02e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00117 - - gmx:100811615 469.159