Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g00114 | ATGGTAAAGAGAGAGACTGCCCCTTCTTATTCTCGTCCCTCGACCCCAACGACGTCGTTCTCTGCACCGTGTGTAAGGACCAACCTCGACGCGGAAGCCAAACATTTACCCTGCAAACACCTTTACCACGCGGACAACATTATGCCGTGGCTAGAACTCCACGCATCATGTCCGTTATGCAGGTTTCAGCTTGAGATCAGGAGAAAGGAGCTTATTGCGAGGCTGACGGGGTTGACGGAGGATGATTTCTACATGTTTAGGATCTCTAGCTGA | 273 | 0.5092 | MVKRETAPSYSRPSTPTTSFSAPCVRTNLDAEAKHLPCKHLYHADNIMPWLELHASCPLCRFQLEIRRKELIARLTGLTEDDFYMFRISS | 90 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g00114 | 90 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 75 | IPR013083 | - | |
Pumo1g00114 | 90 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Pumo1g00114 | 90 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 32 | 64 | - | - | |
Pumo1g00114 | 90 | SUPERFAMILY | RING/U-box | 30 | 67 | - | - | |
Pumo1g00114 | 90 | Pfam | Ring finger domain | 31 | 61 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g00114 | Pumo-Chr1 | 1965615 | 1966728 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g00114 | 33 | 70 | C3H Transcription Factor Family | AT2G44330 | 57.895 | 3.53e-11 | 54.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g00114 | K11982 | - | gmx:100782164 | 88.5817 |