Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00114 ATGGTAAAGAGAGAGACTGCCCCTTCTTATTCTCGTCCCTCGACCCCAACGACGTCGTTCTCTGCACCGTGTGTAAGGACCAACCTCGACGCGGAAGCCAAACATTTACCCTGCAAACACCTTTACCACGCGGACAACATTATGCCGTGGCTAGAACTCCACGCATCATGTCCGTTATGCAGGTTTCAGCTTGAGATCAGGAGAAAGGAGCTTATTGCGAGGCTGACGGGGTTGACGGAGGATGATTTCTACATGTTTAGGATCTCTAGCTGA 273 0.5092 MVKRETAPSYSRPSTPTTSFSAPCVRTNLDAEAKHLPCKHLYHADNIMPWLELHASCPLCRFQLEIRRKELIARLTGLTEDDFYMFRISS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00114 90 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 75 IPR013083 -
Pumo1g00114 90 MobiDBLite consensus disorder prediction 1 20 - -
Pumo1g00114 90 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 32 64 - -
Pumo1g00114 90 SUPERFAMILY RING/U-box 30 67 - -
Pumo1g00114 90 Pfam Ring finger domain 31 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00114 Pumo-Chr1 1965615 1966728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00114 33 70 C3H Transcription Factor Family AT2G44330 57.895 3.53e-11 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00114 K11982 - gmx:100782164 88.5817