Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00104 ATGACTAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACTCAGCTAGGAAGGCAACATTCAAGAAGAGGAAGAAGGGTCTAATGAAGAAGGTTAGTGAACTTAGTACCCTTTGTGGCATTGATGCATGTGCTATAGTTTATAGTCCCTATGATCCTCAACCTGAGGTTTGGCCATCCCCAATGGGGGTTCAAAGGGTGCTTGCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTTTGAGGCAGAGGATTTTAAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAGGAGATGACTCAGCTCATGTTTCAGTACCTTAGTGCTGGTAAGATCATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGTTGATTGACCAGAACTTGAAGGACATCAACAGAAGGATTGAGGTGTTGACTAAGAATGCACAAAGTCAACCCCAAATTGCAGCACCAGTGGTGACTGATGTTGTTGCCAAGGTTGAAGACAAGGGACAAGGGAGTCACCAGGGCCAGGGGTTTGATATCAACATGGATCTCATGCAGAAGCAGAATTGGTTTATGAATTTGATGAATAGTGGTGGTGGTGGTGGTGGTGGGAATGAGGCTATGCCTTTTGGAGATGTTAATCACCAAAATGGCTTTTGGCCTAACCCATTTTTCCATTGA 720 0.4361 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQPQIAAPVVTDVVAKVEDKGQGSHQGQGFDINMDLMQKQNWFMNLMNSGGGGGGGNEAMPFGDVNHQNGFWPNPFFH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00104 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo1g00104 239 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pumo1g00104 239 PANTHER MADS BOX PROTEIN 3 129 - -
Pumo1g00104 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo1g00104 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo1g00104 239 Coils Coil 91 114 - -
Pumo1g00104 239 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Pumo1g00104 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pumo1g00104 239 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Pumo1g00104 239 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo1g00104 239 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00104 Pumo-Chr1 1839874 1840593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00104 1 156 Type I MADS-box Gene Family AT5G48670 68.590 2.83e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo1g00104 SRF-TF 3.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00104 - - gmx:100813231 450.669