Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00103 ATGGTTTTGTCTTGGACTAGAAGAAACGTTTTCCGCCGTGCCAAGAAGGAGAAGGGACAAACTCAAGGAGGTGAATTAGAGGTTGAGGTTGTGATTCCTAACCACTTTCGGTGCCCGGTGAGTTTGGAGTTGATGACAGACCCGGTGACTTTATCAACCGGCATCACCTACGACAGGGTGAGCATTGAGAAGTGGATTGAGGGAGGGAACAAGACTTGCCCCGTCACCAACCAGGTGCTGGCAACCTTTGACATCATCCCCAACCACGCCATTCGTAGGATGATTCAGGATTGGTGTGTTGAAAACAGCTCTTATGGGATTGAGAGGATCCCCACTCCTCGGATTCCTGTCTCCAGCTACGAGGTCTCAGAGGCATGTACGAGGATCTTGTCGGCTTGTCAGCGTGGGGATGAGAAAAGGTGTCAGGAGTTGGTCGGGAAGATTAAGGTTTGGGGTAGAGAGAGTGAGAGGAACAAGAAGTGCATAGTTGGTGCTGGTGCTGATGCTGGTGCTGTTCTTGCATATGCCTTTGGTTGTTTCTCAAGTGACTCTATTGATAAGCATGTGGTACTTTTGGAGGAGGTTTTGGAGGTGATGACATGGATGATCCCACTTGGGGATGAGGGTGTTTCTAAATTGAGTTCAAGAGCTTCTTTGAATTCATTGGTTTGGTTTCTAGAGGGGAAAGACCTTGCAGCAAGGCGAAGTGCTGCTTTGTTGCTCAAGGAAGTGTGTGTTCAAGAATTGGCCAAAGTTGGAAAGGTTGTTGAAGCTTTGGTTAAGATGATTAGAGAGCCTATTGGGAGTACTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCATCAGCTGAGAATAGAGGGGAAATTGCTCCAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCCAAAAGGGGAAGGAGGTTGTTAAGAGCAATGCTCTAGCCTTGCCTCTTGTCATTAAGAAGCTTTTGAGGGTGTCACCGTTGGCTTCAAGTTTTGGTGTGTCTATTCTTAGGAAGATTTGTGACAAGAGGGAGGAAGGGGTTCTGATTGAGGCACTTCAAGTTGGAATTTTTCAGAAACTCTTGGTTATGCTGCAGGTTGGGTGTGATGAGAGCACCAAGGAGAATGCTACCGGGTTGTTGAAACTGTTGAATGGGTACAGGAACAAAGCGGAGTGCACTGACTCATCATTGGATTTCAAGCATCTTAAGAAGCCCTTCTGA 1311 0.4683 MVLSWTRRNVFRRAKKEKGQTQGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQVLATFDIIPNHAIRRMIQDWCVENSSYGIERIPTPRIPVSSYEVSEACTRILSACQRGDEKRCQELVGKIKVWGRESERNKKCIVGAGADAGAVLAYAFGCFSSDSIDKHVVLLEEVLEVMTWMIPLGDEGVSKLSSRASLNSLVWFLEGKDLAARRSAALLLKEVCVQELAKVGKVVEALVKMIREPIGSTSTKACLATIFNLVSSAENRGEIAPRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCQKGKEVVKSNALALPLVIKKLLRVSPLASSFGVSILRKICDKREEGVLIEALQVGIFQKLLVMLQVGCDESTKENATGLLKLLNGYRNKAECTDSSLDFKHLKKPF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00103 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 109 IPR013083 -
Pumo1g00103 436 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Pumo1g00103 436 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Pumo1g00103 436 SUPERFAMILY RING/U-box 26 108 - -
Pumo1g00103 436 Gene3D - 209 424 IPR011989 -
Pumo1g00103 436 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Pumo1g00103 436 SUPERFAMILY ARM repeat 173 413 IPR016024 -
Pumo1g00103 436 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Pumo1g00103 436 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Pumo1g00103 436 CDD RING-Ubox_PUB 33 84 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00103 Pumo-Chr1 1836300 1838034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00103 24 436 U-box Gene Family AT5G37490 47.619 8.14e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00103 - - gmx:548086 761.525