Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00102 ATGAGGAACCACATCGCTACTTTCCTATCCTGTTTCCTCTCACTGATCCTCTACGCGCACTCCCAAGATGACGCTTCAGCAATGCTCGCTCTCAGGGACACGCTCAACCCACCCGAATCCCTCGGGTGGTCCGACCCGGACCCGTGTAAATGGAAACACGTCCTCTGCTCCGAAGCAAACCGGGTCACCCGGATCCAAATCGGCCATCAGGGCCTCCAGGGAACGCTCCCCAACGCCACCGTGATCCAAACCCTGACCCAATTGGAACGCTTGGAGCTCCAATTCAACAACATTTCGGGTCCTCTCCCGAGCCTAAACGGGTTAAGCTCCCTCCAAGTCCTCATTCTCAGCAGCAACCAATTCTCTTCCATCCCCAACGACTTCTTCTCCGGCATGTCGGAGCTTCAAAGCGTCGAGATCGACAACAACCCCTTCAAACCATGGACTATCCCCGACAGCATCGTTAACTGTTCTTCCCTCCAAAACTTCTCTGCAAATTCCGCCAACATTGTCGGAACGCTTCCGGATTTTTTTTCGAGTCTTCCCACGTTGACCCATTTGCACTTGGCCTTCAATAATCTCGAGGGTGGGTTGCCTCTGAGCTTTTCTGGGTCTCAGATTGAGACTCTCTGGTTGAACGGACAAAAGGGTAGTGACAGCAACAACCTTGGTGGTAATGTTGATGTTTTGCAAAACATGACGTCGTTGACGCAGGTTTGGTTGCATTCCAACGCTTTTACCGGGCCTCTTCCTGATTTTTCGGGGTTGGGAAGCTTGGAAGATTTGAACTTGAGGGATAACGCTTTCACGGGTCCTGTTCCTGGGTCTTTGGTGGGGTTGAAATCCCTTAACGTTGTGAACTTGACAAATAACTTGTTTCAGGGGGCAGTGCCTGAGTTTGGTTCTGAGGTTGAGGTGGATTTGGATTTGGGTGATGATTCTAATAGTTTTTGTTTGCCACGTGGAGGTAAGTGTGATCCAAGGGTGGAGATTCTGCTTTCTATTGTGAGGTTTTTTGGGTATCCTAAAAGGTTTGCTGAGAATTGGAAGGGGAATAATCCTTGTGCGGATTGGATTGGGGTTACTTGTAGCAGTGGTGGGGATATTACTGTTGTTAATTTTCAGAAGATGGGTCTTGAGGGTACTATAGCTCCTGAGTTTGCTTTGCTTAAATCACTGCAAAGGCTTGTGCTTGCTGATAATAATCTCACTGGGTCAATTCCAGAAGAGCTAGCTTCTTTACCTGGGCTTGTTGAATTGAATGTTGCAAACAATCGGCTTTATGGGAAGATCCCAGGTTTTAAGAGCCATGTGGTTCTTACCACAAATGGGAATAAGGATATAGGGAAGGATAAGCCCAACCCAGGGCCAGGATCATCACATTTAGGTCCACTAAATTCAACAGCTCCAAACAGAAGTGAAGAAAATGGTGGGAAAAGATCTTCACATGTAGGGGTGATTGTGTTTGCTGTGATTGGTGGTGTGGTGATGGTTTTGGTGATTGGTTTCTTGGTTTTTTGTTTGTTTAGGATGAAGCAAAAACAGCTGAGCAAGGTGCAGAGTCCAAATGCATTGGTTATTCACCCGCGGCATTCTGGATCGGATAATGAAACTGCGAAGATAGCGATTGCAGGTTCAAGACTTACTGTTGGTGATGTTAGTGGAATTGGAATGCAAACCATGGCTAACAGTGAGGCGGGGGATATCCAGATGGGTGAAGCAGGAAACATGGTTATTTCTATACAAGTTCTGAGGAATGTCACTGGCAACTTCAGTGAGAAAAATATACTGGGACAAGGAGGTTTTGGAACAGTTTATAAGGGTGAACTGCATGATGGCACAAAAATTGCAGTGAAAAGGATGGAGTCTGGGGCAATAAGTGGGAAAGGTGCAACGGAATTTAAGTCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGGCATCTTGTTTCTCTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTATATGCCTCAAGGGACATTAAGTAAGCACCTTTTTAACTGGATGGAAGAAGGACTGAAGCCACTGGAGTGGAACAGAAGATTGTCCATTGCCTTAGATGTGGCAAGGGCTGTTGAGTATCTTCATAGCTTGGCCCATCAAAGCTTTATTCATAGAGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTTCAGATTTTGGCCTTGTGCGTCTTGCTCCAGAAGGAAAAGTTTCCATAGAAACAAGGATTGCTGGAACTTTTGGATATTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAGCTGATAACTGGAAGAAGAGCACTTGATGATACCCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTATGTAAATAAAGACTCATTCCACAAAGCCATTGACCACACAATTGATCTCAATGAGGAAACACTTGCTAGTATTCACACTGTGGCCGAGTTAGCCGGCCACTGTTGTGCAAGGGAGCCATATCAAAGGCCTGACGCAGGTCATGCTGTTAATGTGCTTTCTTCTCTTGTAGAACTTTGGAAACCATCTGATCAAAGTTCAGAAGATGTATATGGCATTGACCTACACATGTCTTTACCACAAGCATTGAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAAATGGAGTCTTCTTCTTCTTCACTCCTTCCTCCTAGCTTGGATAACACTCAGACAAGCATACCTACGCGTCCATATGCATTTGCTGAGTCTTTCACATCAGCAGATGGTAGGTGA 2838 0.4581 MRNHIATFLSCFLSLILYAHSQDDASAMLALRDTLNPPESLGWSDPDPCKWKHVLCSEANRVTRIQIGHQGLQGTLPNATVIQTLTQLERLELQFNNISGPLPSLNGLSSLQVLILSSNQFSSIPNDFFSGMSELQSVEIDNNPFKPWTIPDSIVNCSSLQNFSANSANIVGTLPDFFSSLPTLTHLHLAFNNLEGGLPLSFSGSQIETLWLNGQKGSDSNNLGGNVDVLQNMTSLTQVWLHSNAFTGPLPDFSGLGSLEDLNLRDNAFTGPVPGSLVGLKSLNVVNLTNNLFQGAVPEFGSEVEVDLDLGDDSNSFCLPRGGKCDPRVEILLSIVRFFGYPKRFAENWKGNNPCADWIGVTCSSGGDITVVNFQKMGLEGTIAPEFALLKSLQRLVLADNNLTGSIPEELASLPGLVELNVANNRLYGKIPGFKSHVVLTTNGNKDIGKDKPNPGPGSSHLGPLNSTAPNRSEENGGKRSSHVGVIVFAVIGGVVMVLVIGFLVFCLFRMKQKQLSKVQSPNALVIHPRHSGSDNETAKIAIAGSRLTVGDVSGIGMQTMANSEAGDIQMGEAGNMVISIQVLRNVTGNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAISGKGATEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFNWMEEGLKPLEWNRRLSIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKVSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRRALDDTQPEDSMHLVTWFRRMYVNKDSFHKAIDHTIDLNEETLASIHTVAELAGHCCAREPYQRPDAGHAVNVLSSLVELWKPSDQSSEDVYGIDLHMSLPQALKKWQAYEGRSQMESSSSSLLPPSLDNTQTSIPTRPYAFAESFTSADGR 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00102 945 FunFam Leucine-rich repeat receptor-like kinase 327 451 - -
Pumo1g00102 945 FunFam receptor protein kinase TMK1 553 668 - -
Pumo1g00102 945 CDD STKc_IRAK 597 870 - -
Pumo1g00102 945 Gene3D Transferase(Phosphotransferase) domain 1 669 888 - -
Pumo1g00102 945 ProSitePatterns Protein kinases ATP-binding region signature. 597 619 IPR017441 GO:0005524
Pumo1g00102 945 FunFam Receptor-like kinase TMK4 22 323 - -
Pumo1g00102 945 Gene3D Phosphorylase Kinase; domain 1 553 668 - -
Pumo1g00102 945 ProSiteProfiles Protein kinase domain profile. 591 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00102 945 PANTHER OSJNBA0070M12.3 PROTEIN 8 945 - -
Pumo1g00102 945 SMART LRR_typ_2 181 204 IPR003591 -
Pumo1g00102 945 SMART LRR_typ_2 85 107 IPR003591 -
Pumo1g00102 945 SMART LRR_typ_2 390 414 IPR003591 -
Pumo1g00102 945 SMART LRR_typ_2 108 131 IPR003591 -
Pumo1g00102 945 SMART LRR_typ_2 256 279 IPR003591 -
Pumo1g00102 945 Gene3D Ribonuclease Inhibitor 20 325 IPR032675 -
Pumo1g00102 945 MobiDBLite consensus disorder prediction 442 479 - -
Pumo1g00102 945 Pfam Leucine rich repeat 87 144 IPR001611 GO:0005515
Pumo1g00102 945 Pfam Protein kinase domain 592 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00102 945 SUPERFAMILY L domain-like 34 440 - -
Pumo1g00102 945 SMART serkin_6 591 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00102 945 Pfam Leucine rich repeat N-terminal domain 329 364 IPR013210 -
Pumo1g00102 945 Pfam Leucine rich repeat N-terminal domain 22 57 IPR013210 -
Pumo1g00102 945 SUPERFAMILY Protein kinase-like (PK-like) 579 886 IPR011009 -
Pumo1g00102 945 MobiDBLite consensus disorder prediction 908 933 - -
Pumo1g00102 945 ProSiteProfiles Leucine-rich repeat profile. 110 131 IPR001611 GO:0005515
Pumo1g00102 945 Gene3D Ribonuclease Inhibitor 327 452 IPR032675 -
Pumo1g00102 945 FunFam receptor protein kinase TMK1 669 886 - -
Pumo1g00102 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
Pumo1g00102 945 MobiDBLite consensus disorder prediction 460 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00102 Pumo-Chr1 1829178 1832590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00102 65 858 Receptor kinase-like Gene Family AT1G55610 31.183 1.83e-86 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pumo1g00102 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00102 K00924 - gmx:100813768 1713.35