Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00100 ATGAAACAACACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATATATCTATTCAAGAAACATATGCAGGTCCTTGCAGTGACAACCTCACCAACTCTCCCAATGTCACAAATCCAATAGAACTTCATCTCCATTCAGATGCTATCTCCCTTGACTTAACTCTCAACTTCAACAACAATGACATAGTGGTTAGAGATTCAACAGGACTCTCATTCTCAAGCACTAGTGAGAGCGGCAATGATCCTCCCTCTCAAACTACTCCAGCAACCAACCCGCGAGTCTTCTCTTGCAATTACTGCAAGCGCAAGTTTTTCAGCTCGCAGGCTCTTGGCGGCCACCAAAATGCACACAAGAGAGAAAGAACATTAGCAAAGAGAGCTATGCGGATGGGGTTTTTCTCTGAGAGGTATGCAAGTCTAGCATCTCTCCCTTTTCATGGATCTTTCAGGTCCTTAGGAATAAAGGCACACTCTTCACTGCACCATGGTTTTTCACCAACAATGAGGCCTCCTGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATATTGGTCTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTGGGAGGCCATACTCATCAGAATTTCACACTGAGTGGAAGTTCAAATTTGAGTTTTATTGGGGTGAATCATGATCATCCACCGGTTGACATAGAGAACTCAACACCTGAGTTAACATTGAAACTTTGA 777 0.4376 MKQHFDLEVVASAEYESEVSSQVASNISIQETYAGPCSDNLTNSPNVTNPIELHLHSDAISLDLTLNFNNNDIVVRDSTGLSFSSTSESGNDPPSQTTPATNPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPFHGSFRSLGIKAHSSLHHGFSPTMRPPEMKSSARFEQGYIGLPIFLEEDEAELLWQGSYHQVGGHTHQNFTLSGSSNLSFIGVNHDHPPVDIENSTPELTLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00100 258 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Pumo1g00100 258 SUPERFAMILY beta-beta-alpha zinc fingers 101 133 IPR036236 -
Pumo1g00100 258 Gene3D Classic Zinc Finger 93 151 - -
Pumo1g00100 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 49 187 IPR044246 GO:0009788
Pumo1g00100 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Pumo1g00100 258 FunFam Zinc finger protein 2 83 152 - -
Pumo1g00100 258 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00100 Pumo-Chr1 1794181 1797190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00100 99 258 C2H2 Transcription Factor Family AT1G66140 49.474 4.26e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo1g00100 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00100 - - gmx:100815175 437.573