Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00093 ATGCCCTTGGAGGGGATTTTCATTGAACCTACTTCAACTTCTACACCTGATCTTTCCCTTCACATAAGTCCACCAAGCACTTCCTCTTCCTCTTCTCTGATTTGCAACAACAACAACAACACATCTGGCGGTGGTGGCATCAATTATGAGGCACACAATTCAACAAGCACAAATTTCCCTTCTCAAGCTCACACCGAGCTTTCTCTGGGAAGGAATTTCAGTGGTGGAGGAGGAGGAGGAAGAGGAGCTCTAGAAGAACCACCACCACACAGCAACAACAACCCTTATTATCAAACCCAACAGGCCCATTTCCATCATCTTCACCACCATTCTAATGCTTCAAAAGCAGCAACAACAACAAGCACTACTACTACAAGTTCCTCCAATCACTTGAGTCACATAAATTATGGGGTTTCTTTGCTTGATATGTCATCAGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATTCAAGAGACAAGGATCATCATGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCTCTTTGTCCTCTTCTTGTTCTCCTCTGTGCTCCTCTTCTTCTCCTTCTTCTTCTTCTCCTGCACCCTACTTTGCCGCCGCCGCGGCAGGAGTTCTGGATCCCATGTCCTACCTGAGCTCAGGTGGGACCACCGCCACGGCGGCCGCGGCATATAGGGCTGCCACGGCCACAAGGTTTAATGGAATTTCCGGGGAGGCTTTCAAATCTCATCATCCATTGCACCACCATCACTCATCATCACACTATGGGGTTGGACTTGGACCCTCTCATGAGGCCTCTTCAGGGTTGATGAGATCAAGGTTTTTGCCCAAGTTACCAAGCAAGAGAAGCATGAGAGCACCCAGAATGCGGTGGACGAGCACACTTCACGCTCGATTTGTCCATGCTGTGGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCAGGAGAAGATGACATGTCTCCAATGGGAAGCAGTGGTGGCATGCGTCAATTTTCAGACCAAAGAGGCCTTTCGGATCGACCAGTGCAACAAGACATGGACTACTCTTCAGCCAACAACACTCTATGGAGTAACTCTTCAAGCGGTAGAGAACCATGGCCACAAAATAGCTCTAACGACATAGATGGTTTCAGACCCCCAATCTTCCAGTCACAACAAATATCAGGAGGGCATCAAATTCAGGAGTGTGATTCAACTCAACTCAAGAACAGCTTGTCAGGATCAAATTTAGAGTGCAAGAACCCAAGCTTGGAGTTCACATTAGGGAGACCGGATTGGAATGGCAAAGGACAAGCCTAA 1476 0.4729 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNNNNTSGGGGINYEAHNSTSTNFPSQAHTELSLGRNFSGGGGGGRGALEEPPPHSNNNPYYQTQQAHFHHLHHHSNASKAATTTSTTTTSSSNHLSHINYGVSLLDMSSEGLRPIKGIPVYHNRSFPFLPMEHSRDKDHHAKMCLYHHMPTYPSLSSSCSPLCSSSSPSSSSPAPYFAAAAAGVLDPMSYLSSGGTTATAAAAYRAATATRFNGISGEAFKSHHPLHHHHSSSHYGVGLGPSHEASSGLMRSRFLPKLPSKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRGLSDRPVQQDMDYSSANNTLWSNSSSGREPWPQNSSNDIDGFRPPIFQSQQISGGHQIQECDSTQLKNSLSGSNLECKNPSLEFTLGRPDWNGKGQA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00093 491 SUPERFAMILY Homeodomain-like 300 356 IPR009057 -
Pumo1g00093 491 NCBIfam myb-like DNA-binding domain, SHAQKYF class 303 356 IPR006447 GO:0003677
Pumo1g00093 491 MobiDBLite consensus disorder prediction 67 129 - -
Pumo1g00093 491 FunFam Myb family transcription factor 301 359 - -
Pumo1g00093 491 Gene3D - 302 359 - -
Pumo1g00093 491 MobiDBLite consensus disorder prediction 1 39 - -
Pumo1g00093 491 MobiDBLite consensus disorder prediction 358 491 - -
Pumo1g00093 491 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 488 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pumo1g00093 491 MobiDBLite consensus disorder prediction 384 474 - -
Pumo1g00093 491 MobiDBLite consensus disorder prediction 8 39 - -
Pumo1g00093 491 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00093 Pumo-Chr1 1756398 1762592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00093 149 488 G2-like Transcription Factor Family AT5G16560 45.730 5.87e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo1g00093 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00093 - - gmx:100813413 699.508