Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00086 ATGTATGTGGGGTTTTCTGGGTCTACCCAAGGTAGCACCGAGGTGCACAGTGTTGAGTGGTGGAGTTTTAACTCTTCATTCGATTCCGCGGCGGCTCCTGCCGCCACGTCAGCACCCTCCGCCACGTCAGCACCTGAGCAAAAGGAGAGTAAGTCTTCTAAGAAGGGTACTGTGGGGGCAGTTGCTGGGGTTGTCACTGCTGGTGCTTTTGTTCTTGCTCTCTTTGCGGGTGCATTCATTTGGGTGTATTCTAAGAAGGTTAAGCGTGTGAAGAAGCTTGATCATTCTATTGAGTCGGAGATTATTAGAATGCCTAAGGAGTTTAGCTACAAGGAGCTGAAATTGGCCACCAAGGGGTTCAGTGCTAATAGGGTCATTGGTAATGGTGCTTTTGGGACTGTTTACAAGGGTGTGTTCCCTGAGAGTGGTGACATTGTTGCGGTGAAGAGGTGTAACCATAGTGGTCAGGGGAAGAATGAGTTTTTGTCTGAGTTGTCTATAATTGGAAGTCTTAGGCATCGGAATTTGGTTCACCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCCAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGAATGCCTTTGTCATGGCCTCACAGGCTCAAAATTTTGTTAGGTGTGTCGTCTGTTTTGGCCTACTTGCATCATGAATGTGAAAACCAGGTAATACACAGGGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCCCGGTTAGGCGATTTTGGTTTAGCGAGGCAAACGGAGCATGACAAGTCTCCTGATGCCACTGTGGCTGCTGGGACAATGGGGTACCTTGCACCAGAGTACGTGCTTACCGGTAGAGCCACAGAGAAAACTGATGTGTTTAGCTATGGTGCTGTGGTTCTTGAGGTGGCCAGTGGGAGGAGGCCTATTGAGAAAGATGCTGCTGCTGGGAATGGTAAAGTTAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTGCATCAAGAAGGTAAGTTGCTAACGGCGGCTGATCCGAGGCTTGAAGGCGAGTTTGAGGAAGGGGAGATGAGGAGGGTACTCTTGGTTGGATTAGCTTGTTCACACCCTGATTCAATGGCAAGACCTACTATGAGGGGTGTGGTTCAGATGCTGCTGGGTGAGGCTGAAGTGCCTATTGTCCCTAGAGCCAAGCCATCTACTAGTTACAGTACTTCTCAACTCTTAATGAGCTTGCAAGATAGTGAATCTGACTGTAATAATGGTTGCTGTCTATGCTTCTCTTTGTGA 1311 0.4744 MYVGFSGSTQGSTEVHSVEWWSFNSSFDSAAAPAATSAPSATSAPEQKESKSSKKGTVGAVAGVVTAGAFVLALFAGAFIWVYSKKVKRVKKLDHSIESEIIRMPKEFSYKELKLATKGFSANRVIGNGAFGTVYKGVFPESGDIVAVKRCNHSGQGKNEFLSELSIIGSLRHRNLVHLQGWCHEKGEILLVYDLMPNGSLDKALYEARMPLSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDAAAGNGKVSSNLVEWVWSLHQEGKLLTAADPRLEGEFEEGEMRRVLLVGLACSHPDSMARPTMRGVVQMLLGEAEVPIVPRAKPSTSYSTSQLLMSLQDSESDCNNGCCLCFSL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00086 436 ProSiteProfiles Protein kinase domain profile. 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00086 436 CDD STKc_IRAK 126 392 - -
Pumo1g00086 436 FunFam L-type lectin-domain containing receptor kinase VIII.1 196 410 - -
Pumo1g00086 436 SMART serkin_6 120 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00086 436 FunFam L-type lectin-domain containing receptor kinase VIII.1 83 195 - -
Pumo1g00086 436 Gene3D Phosphorylase Kinase; domain 1 81 195 - -
Pumo1g00086 436 Pfam Protein kinase domain 122 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00086 436 Gene3D - 1 65 - -
Pumo1g00086 436 SUPERFAMILY Protein kinase-like (PK-like) 102 422 IPR011009 -
Pumo1g00086 436 Gene3D Transferase(Phosphotransferase) domain 1 196 399 - -
Pumo1g00086 436 PANTHER - 1 402 - -
Pumo1g00086 436 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Pumo1g00086 436 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 142 IPR013320 -
Pumo1g00086 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00086 Pumo-Chr1 1669851 1672268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00086 1 427 Receptor kinase-like Gene Family AT3G53380 66.595 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo1g00086 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00086 - - gmx:100815895 774.237