Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00085 ATGTTGGCTGGATTGGCATTCAAAAGAAGGTGGCAAAACAGAAGGAAACAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAGGAAGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGATAAGGCCGTGGAATTGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATGTCAAACGCTTAAATGACCTCCTAGTTGAAAAGAATAAAGTAACTGGGTGGGACACTCCTATTCATGTGGATGCAGCCAGTGGTGGCTTCATTGCCCCATTTATTTACCCAGAGCTTGAGTGGGACTTCCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGTCTGGTCTATGCTGGAATTGGTTGGGTTATCTGGAGAAGCAAGGACGACTTGCCTGAGGAACTCATCTTCCACATCAACTATCTCGGAGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAAGAGGGACTCGAGAAAACAGGGCGATTTACCATTGTGTCCAAAGACAATGGAGTGCCTTTGGTGGCTTTCTCACTGAAAGACCACACCCACTTTGACGAATTCCAAATCTCTGACCTGCTGAGGCGCTTTGGATGGATAGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTGACAGTGCTTCGTGTTGTCATCAGGGAGGACTTCTCAAGGACCCTCGCGGAGCGTCTCGTGGCTGATGTGGAGAAGGTGCTGCATGAGCTTGATTCACTTCCTGCAAGGGTGATAAGCAGCACCACTGTGACAGTCAATGCAGAAGAAAATGGCAAGGTAGTGGTTGCTAAGAAGAGTGCTCTGGAGACTCAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGAACAATGACAAGATGAATGGTGTTTGTTAG 1122 0.4688 MLAGLAFKRRWQNRRKQEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPDKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKVTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKDDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCRDNMLVLKEGLEKTGRFTIVSKDNGVPLVAFSLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPARVISSTTVTVNAEENGKVVVAKKSALETQREITAVWKKFVLERKKNNDKMNGVC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00085 373 NCBIfam glutamate decarboxylase 1 314 IPR010107 GO:0004351|GO:0006536|GO:0030170
Pumo1g00085 373 SUPERFAMILY PLP-dependent transferases 1 314 IPR015424 -
Pumo1g00085 373 Gene3D - 231 318 - -
Pumo1g00085 373 FunFam Glutamate decarboxylase 231 318 - -
Pumo1g00085 373 PANTHER GLUTAMATE DECARBOXYLASE 1 363 IPR010107 GO:0004351|GO:0006536|GO:0030170
Pumo1g00085 373 Gene3D - 1 230 IPR015421 GO:0003824
Pumo1g00085 373 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 251 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00085 Pumo-Chr1 1659877 1668807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00085 1 373 Calmodulin-binding Proteins AT5G17330 80.319 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00085 K01580 - gmx:100796533 737.258