Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00077 ATGGCTCCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCCACCGACGAAGAACTCGTTTCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAGATTGAGTTAGAGATCATCCCTGAAGTTGATCTTTATAAGTGTGAGCCATGGGACTTGCCAGGGAAGTCATTGTTACCGGGAAAAGATTTGGAGTGGTATTTCTTCAGTCCTCGAGATAGGAAGTACCCAAATGGATCAAGAACCAATCGTGCAACCAAATCTGGGTATTGGAAGGCCACAGGGAAAGACCGTAAGGTGAACTCTCAGAGCCGTGCAATTGGAATGAAGAAAACCCTAGTTTACTATCGAGGTAGGGCACCACATGGTTGTCGCACAGGTTGGGTTATGCATGAATACCGTCTTGATGAGACTCAGTGCGAAACTAATTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGACTGCAGTGATTCCCCCAAAAGTTGGAGATCAGCACTATGTTAATGTCCCTAGCCATGCAAATCAGATTACAAGTGATCAATCATCAAGCATTGAGCTATACTCTGAAGGAAGAGGTGAAGTGTTGGAGAGCTCAAATTATTTGATGCCGTGGGATACATGCCCATCCCCAAACATAAATGGGGCTACTGCTCTCAATATCAATATCAATGGTGGGACAAGGGATAATAATAATGGGACATGGTCACACTTCTTATCAGAAGACTTGCTCAATCCTTCCAACATCTACTTCTTCATTTCCCAATTATGGATCTATGAGTTACCCTCCATCAAAGGTGGATATAGCTCTAGAGTGTGCAAGGATGAAGCATAG 840 0.4381 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSRAIGMKKTLVYYRGRAPHGCRTGWVMHEYRLDETQCETNSGLQDAYALCRVFKKTAVIPPKVGDQHYVNVPSHANQITSDQSSSIELYSEGRGEVLESSNYLMPWDTCPSPNINGATALNININGGTRDNNNGTWSHFLSEDLLNPSNIYFFISQLWIYELPSIKGGYSSRVCKDEA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00077 279 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pumo1g00077 279 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pumo1g00077 279 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Pumo1g00077 279 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Pumo1g00077 279 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 181 - -
Pumo1g00077 279 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00077 Pumo-Chr1 1581264 1583560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00077 1 244 NAC Transcription Factor Family AT1G65910 66.393 1.44e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo1g00077 NAM 2.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00077 - - gmx:100818019 495.352