Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00075 ATGTCACAACAAACACTAACCATTCTTCTATTCACACTCTTTACTCTTACTTCTTCACCAGCCACTTGTTTATACTCTCCATCACCCCCCGCCGCGCCATTTTCCGAAACTACCCCCGACCCCGAACCTTCTCCACGCGCCGAAGAATGGCTACCCGCCCACGCAACTCACTACGCCGCCACCGACGCGGTCGGCGGCGCGTGCGGCTACGGCGACCTCATTAACGGCGGTTACGGCAAGGCCACCGCCGCCCTCAGCGAGGCCCTCTTCGACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGGTGCCGCGAGGAGGACTCCGACTTCGACCGCCGCTGGTGCATCTCCGGAACCTCCGTCGCCGTCACCGCCACCAATTTCTGCGCCCCTAACTACGGCTCCGACGCCGAAAGCGTGGCCGGACATTGTAACCCTCCGAAGCAGCACTTCGTGCTTCCCATTGAAGCATTCGAAAAAATCGCAATCTGGAAGGCTGGCACTGGCAACATGGCCGTTGAGTATCGCAGGATAAAGTGTACAAGGGAAGGGGGGATCCGATTTACAATTACTGGTTCTGGAATCTTCATTTCGGTTCTGATTAGTAATGTGGCTGGCACGGGGGACATTGTGGCTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTCCCATGGGTAGGAATTGGGGTCAGAACTGGCATGCTAATGCATTACTACAGAACCAACCTCTTTCCTTTGAGGTTACGAGTAGTGAAAGGATAACTGTTACATCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAATCTTTTGAAGGCAAGCAATTTGAGTCTTGA 843 0.5457 MSQQTLTILLFTLFTLTSSPATCLYSPSPPAAPFSETTPDPEPSPRAEEWLPAHATHYAATDAVGGACGYGDLINGGYGKATAALSEALFDRGQICGACFELRCREEDSDFDRRWCISGTSVAVTATNFCAPNYGSDAESVAGHCNPPKQHFVLPIEAFEKIAIWKAGTGNMAVEYRRIKCTREGGIRFTITGSGIFISVLISNVAGTGDIVAVKVKGSKTGWLPMGRNWGQNWHANALLQNQPLSFEVTSSERITVTSYNVAPKDWTFGQSFEGKQFES 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00075 280 SUPERFAMILY Barwin-like endoglucanases 49 204 IPR036908 -
Pumo1g00075 280 PANTHER EXPANSIN-A15 10 278 IPR002963 GO:0009664
Pumo1g00075 280 SMART dpbb_1 82 176 IPR007112 -
Pumo1g00075 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 275 IPR007117 -
Pumo1g00075 280 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Pumo1g00075 280 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Pumo1g00075 280 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Pumo1g00075 280 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Pumo1g00075 280 Gene3D - 38 182 IPR036908 -
Pumo1g00075 280 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Pumo1g00075 280 PRINTS Expansin signature 142 159 IPR002963 GO:0009664
Pumo1g00075 280 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Pumo1g00075 280 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Pumo1g00075 280 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Pumo1g00075 280 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Pumo1g00075 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 186 IPR007112 -
Pumo1g00075 280 SUPERFAMILY PHL pollen allergen 183 275 IPR036749 -
Pumo1g00075 280 CDD DPBB_EXPA_N 49 181 - -
Pumo1g00075 280 Pfam Lytic transglycolase 82 172 IPR009009 -
Pumo1g00075 280 Pfam Expansin C-terminal domain 187 264 IPR007117 -
Pumo1g00075 280 Gene3D - 186 278 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00075 Pumo-Chr1 1538348 1539968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00075 49 280 Expansin Gene Family AT3G03220 73.191 2.96e-125 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00075 - - gmx:100790211 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00075 1 1538348 1539968 Pumo1g00075 1 1538348 1539968 ECH
Pumo1g00075 1 1538348 1539968 Pumo9g02514 9 59940995 59943041 PCT