Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00074 ATGGCGATTCAAGATCAAAATGGATTTAACAGATCACAGGATGGTCCTCCAGTAGGAAGTGGAGTATCTTTGAGTTCTGGAGTGCATTCTGTTACACATATTCAACTTAATGACCAGTTTTCTTGTGGGAGTGACTATGCTCTGAAGGTAAGGAAACCATATACTATCACGAAACAGAGAGAGAGATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGTATGGACGGGCTTGGCGACGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGATCCTACCGGGAACAATACAAATGCAGTGGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAACTAGTTGAGATCCCTAATAAAGAAATTTCGATGCCAGAACAACTTATGACGTCTAATTCTCTGAAGTCATCAGATTTTGATCAAGAACACCAATCTCCTAAATCAGTATTATCAGGAGTTGGTTCAGACAGCCTTGGCTCCTCTGATTCAGACACACCAAATGGAAGTTTGTCCCCCATGTCATCCATTAGTGGCATCCATACTAGCGGTTTTACACGTGCTGAACCCAAAACAACATCCGAGGAAGCTGGGATAGACACTGATTCAGCTCATGATGAGAAACCTCTTATGAAATTCAAGCTTCCTCCAAATGAAAGTGTTTCCATCAAAGAAGACACGGCAGAAGAATCTTCCGGTCGAACTTTGAAACTTTTTGGAATGACTCTATTTGTAACAGATGCCTGCAAACCATCTTCAACAATTGAGGCATGCAAACCAATACCTCTAAACATACGTGCGCAATGCCTTACCATGGGGGATGGAAAATTGGAACTTCTTGGCCACTCTACACCAAGTGAAACATCAGCCATGTCCCAGCTAAAGGTGAGAGTGGGAGCTGAAACATGTGGGAAAGGGTTTGTGCCATATAAAAGATGCATGGTGGCAGGGAGAGAAAACCAATCTTCATCTGTTGTGACAACTGATAATAGAGAGGAGCAATGCATACATCTTTCCTTGTAG 1104 0.423 MAIQDQNGFNRSQDGPPVGSGVSLSSGVHSVTHIQLNDQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNNTNAVESIEIPPPRPKRKPMHPYPRKLVEIPNKEISMPEQLMTSNSLKSSDFDQEHQSPKSVLSGVGSDSLGSSDSDTPNGSLSPMSSISGIHTSGFTRAEPKTTSEEAGIDTDSAHDEKPLMKFKLPPNESVSIKEDTAEESSGRTLKLFGMTLFVTDACKPSSTIEACKPIPLNIRAQCLTMGDGKLELLGHSTPSETSAMSQLKVRVGAETCGKGFVPYKRCMVAGRENQSSSVVTTDNREEQCIHLSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00074 367 MobiDBLite consensus disorder prediction 220 240 - -
Pumo1g00074 367 MobiDBLite consensus disorder prediction 116 255 - -
Pumo1g00074 367 SMART sant 59 107 IPR001005 -
Pumo1g00074 367 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Pumo1g00074 367 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Pumo1g00074 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Pumo1g00074 367 PANTHER SWI/SNF COMPLEX-RELATED 45 288 - -
Pumo1g00074 367 MobiDBLite consensus disorder prediction 126 143 - -
Pumo1g00074 367 MobiDBLite consensus disorder prediction 152 217 - -
Pumo1g00074 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Pumo1g00074 367 Gene3D - 62 108 - -
Pumo1g00074 367 MobiDBLite consensus disorder prediction 1 24 - -
Pumo1g00074 367 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Pumo1g00074 367 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Pumo1g00074 367 CDD SANT 62 105 IPR001005 -
Pumo1g00074 367 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00074 Pumo-Chr1 1533263 1536598 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo1g00074 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00074 - - gmx:780539 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00074 1 1533263 1536598 Pumo1g00074 1 1533263 1536598 ECH