Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00055 ATGCAAGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTGGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGGTTAATGACGAGGGTCGTGAGTACCTTCTTCAACGAGCATGGAAACTGTATGAGAAAGGCATGCAGTTGGAGCTTGTGGACAAGGAGATAGACCCTAATGAATATGATGCAGAAGAAATGAAGAAAATCATAGAAATTGCTTTATTATGCACTCAAGCATCAGCTGCAACAAGGCCAACAATGTCTGAATTAGTAGTGCTACTCAAAAGCAAGAGCTTAGTGGAGAACCTGCGACCAACTACGCCTGTGTTTGTTGAAACGAATATGATGAATAAGGAAGGCAACTCTCCTGGTGCATCTAATGCTACTATCTCCATTTCTGTTCTATCCGCCCGGTGA 432 0.4213 MQGQLSEKADTYSYGIVVLEIISGQKSTDVKVNDEGREYLLQRAWKLYEKGMQLELVDKEIDPNEYDAEEMKKIIEIALLCTQASAATRPTMSELVVLLKSKSLVENLRPTTPVFVETNMMNKEGNSPGASNATISISVLSAR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00055 143 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 125 - -
Pumo1g00055 143 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Pumo1g00055 143 Pfam Protein tyrosine and serine/threonine kinase 3 98 IPR001245 GO:0004672|GO:0006468
Pumo1g00055 143 SUPERFAMILY Protein kinase-like (PK-like) 3 115 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00055 Pumo-Chr1 1279023 1279550 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00055 1 107 Receptor kinase-like Gene Family AT1G56120 47.664 2.31e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo1g00055 PK_Tyr_Ser-Thr 2.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00055 - - gmx:100305452 248.44