Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00054 ATGCCACAGGTTTTAAGTGCAGTTGGACAACAAGCACTACTGGATCTTCAAAACGCAACACCCAAAATTAAAGGTTTTTATGCAGCTACTAAGACACAGGTAGCTGGTGGTAGTAGTGCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCACAGAGGCTAAATGTCTTGATTGCATGACTGTTGGATACAACAACTTACAAAGTTGCCTTCCCAACACAGATGGTACAGCATATGATGCTGGCTGTTTTATGAGATACTCCATCACACCTTTCTTTGCTGATAATCAGACCATTGATATCGCATCCTACTTAAAAGAAGGAGATTCAAGCAAGAAGTGGGCCATTATAGGTGGTGTGGTAGGAGGTGTTGTTCTCCTCCTTCTGTTGTTTGCCTTGAGATTGTTTACAAAACCAAAGAGGGTTCCCAAAGCTGACATACTGGGAGCTACTGAGTTGAGAGGTCCAGTTAACTACAAGTATACAGATTTGAAAGTTGCAACCAAAAATTTCAGTGCTGACAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTCAAGAAACTAGTGTTGGGAAAATCAAGCAAGATGCAGGATGATTTTGAAAGTGAAGTGAAGCTTATAAGTAATGTCCATCATCGAAATCTCGTTAGACTTCTTGGTTGTTGCAGCAAAGGCCAAGAGAGAATCCTAGTTTATGAATTCATGGCAAATAGCAGCCTTGACAAATTCTTATTTGGTGACAAAAAAGGTTCCCTGAATTGGAAACAACGCTATGATATAATATTGGGCACAGCAAGGGGACTAGCATATCTACATGAGGAATTCCATGTGTCCATCATTCATAGAGATATAAAGACCGGTAATATTCTTCTAGATGATGATCTCCAGCCAAAAATTGCTGATTTTGGGTTGGCAAGGCTTTTGCCAAGGGATCGTTCTCATCTTAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCCTGA 1026 0.4055 MPQVLSAVGQQALLDLQNATPKIKGFYAATKTQVAGGSSAIYAIAQCVETATEAKCLDCMTVGYNNLQSCLPNTDGTAYDAGCFMRYSITPFFADNQTIDIASYLKEGDSSKKWAIIGGVVGGVVLLLLLFALRLFTKPKRVPKADILGATELRGPVNYKYTDLKVATKNFSADNKLGEGGFGAVYKGTLKNGKVVAVKKLVLGKSSKMQDDFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEFMANSSLDKFLFGDKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPRDRSHLSTKFAGTLGYTAP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00054 341 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 248 341 - -
Pumo1g00054 341 SMART serkin_6 171 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00054 341 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 341 - -
Pumo1g00054 341 ProSiteProfiles Gnk2-homologous domain profile. 1 92 IPR002902 -
Pumo1g00054 341 FunFam Cysteine-rich receptor-like protein kinase 2 2 92 - -
Pumo1g00054 341 FunFam Cysteine-rich receptor-like protein kinase 2 138 247 - -
Pumo1g00054 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Pumo1g00054 341 Gene3D Phosphorylase Kinase; domain 1 141 247 - -
Pumo1g00054 341 Gene3D Transferase(Phosphotransferase) domain 1 248 341 - -
Pumo1g00054 341 Pfam Salt stress response/antifungal 22 88 IPR002902 -
Pumo1g00054 341 Gene3D - 3 92 IPR038408 -
Pumo1g00054 341 Pfam Protein kinase domain 173 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00054 341 SUPERFAMILY Protein kinase-like (PK-like) 154 341 IPR011009 -
Pumo1g00054 341 ProSiteProfiles Protein kinase domain profile. 171 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00054 341 ProSitePatterns Protein kinases ATP-binding region signature. 177 200 IPR017441 GO:0005524
Pumo1g00054 341 Gene3D Single helix bin 106 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00054 Pumo-Chr1 1275896 1279015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00054 25 336 Receptor kinase-like Gene Family AT1G70530 44.410 1.29e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo1g00054 Pkinase 6.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00054 - - gmx:100793189 596.66