Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00052 ATGAGATACTCGGAGACACCCTTCTTTGCTGATAACCAAACCACTGATATCAGTCCCTTCATAAAACAAGGACGAGGAGGTTCAAGCAAGAAGTGGGTCGTTATTGGTGGTGGTGTTGCAGGTGCAGTTCTTGTTGTGATCCTTCTTTCATTATTACCCTGGCATAGAAGATCCCAAAGTCCTAAGAGAGTTCCTAGAGCTTACATATTGGGAGAAACCGAGTTGAAAGCTCCAACCAAGTACAAGTATAGTGACTTGAAAGCTGCAACAAAAAATTTTAGTGAGAAAAATAAGCTAGGGGAAGGAGGCTTTGGCGCTGTATACAAGGGGACGATGAAAAATGGGAAAGTTGTTGCAGTAAAAAAGTTACTTTCTGGAAAATCCAGCAAGATAGATGATGATTTTGAAAGTGAAGTAACGCTTATAAGTAATGTTCATCACAGAAATTTGGTTCGACTTCTTGGTTGTTGCAGTAAAGGCCAAGACAGAATTCTTGTTTACGAATACATGGCAAACACCAGCCTTGACAAATTCTTATTTGGAAAAAGAAAAGGTTCACTCAACTGGAGACAACGCTATGATATAATTTTGGGTACAGCAAGGGGATTGGCCTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGACTGGCAATATCCTCTTGGATGACGAATTTCAGCCCAAAATTTCTGATTTTGGGTTGGTGAAGCTCCTACCAGGGGACCAATCTCATCTTAGCACAAGATTTGCTGGGACATTGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTGTCAGAAAAGGCTGATACATACAGCTATGGAATTGTAGTCCTAGAAATCATAAGTGGTCAAAGGAGTACTGATGTGAAGGTTGTTGATGATGATGGTGAAGATGAATACCTTCTTCGACAAGCATGGAAGTTGCATGAGAGAGGCAATTTCTTGGAGTTAGTGGACAAAAGCTTAGACCCTAATAGCTATGATGCAGAAGAAGTGAAGAAAGTGATAGAGATTGCTTTGTTGTGCACTCAAGCTACGGCTGCAATGAGGCCAGCCATGTCTGAAGTAGTAGTCCTACTCAGTAGCAATGACTTACTTGATCATATGAGACCTTCGATGCCTATCTTTTTTGAGTCAAAATTAAGACCCCACAAAGATATATCTGCTTCAACTGGTTCCTCTACGACTAATGCTACTAACTCCAATTCTATAGTACCTGCTCGATGA 1248 0.4062 MRYSETPFFADNQTTDISPFIKQGRGGSSKKWVVIGGGVAGAVLVVILLSLLPWHRRSQSPKRVPRAYILGETELKAPTKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLLSGKSSKIDDDFESEVTLISNVHHRNLVRLLGCCSKGQDRILVYEYMANTSLDKFLFGKRKGSLNWRQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDEFQPKISDFGLVKLLPGDQSHLSTRFAGTLGYTAPEYALHGQLSEKADTYSYGIVVLEIISGQRSTDVKVVDDDGEDEYLLRQAWKLHERGNFLELVDKSLDPNSYDAEEVKKVIEIALLCTQATAAMRPAMSEVVVLLSSNDLLDHMRPSMPIFFESKLRPHKDISASTGSSTTNATNSNSIVPAR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00052 415 CDD STKc_IRAK 99 364 - -
Pumo1g00052 415 SUPERFAMILY Protein kinase-like (PK-like) 77 389 IPR011009 -
Pumo1g00052 415 Gene3D Transferase(Phosphotransferase) domain 1 170 377 - -
Pumo1g00052 415 Pfam Protein tyrosine and serine/threonine kinase 96 365 IPR001245 GO:0004672|GO:0006468
Pumo1g00052 415 ProSiteProfiles Protein kinase domain profile. 93 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00052 415 FunFam Cysteine-rich receptor-like protein kinase 2 57 169 - -
Pumo1g00052 415 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 37 401 - -
Pumo1g00052 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Pumo1g00052 415 SMART serkin_6 93 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00052 415 MobiDBLite consensus disorder prediction 394 415 - -
Pumo1g00052 415 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Pumo1g00052 415 Gene3D Phosphorylase Kinase; domain 1 69 169 - -
Pumo1g00052 415 FunFam Cysteine-rich receptor-like protein kinase 2 170 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00052 Pumo-Chr1 1260363 1266024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00052 78 370 Receptor kinase-like Gene Family AT1G56120 53.925 1.91e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo1g00052 PK_Tyr_Ser-Thr 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00052 - - gmx:100777409 684.1