Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00042 ATGGAGACCATGCGCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGGCCTTATCAGAAAGAAGTTATTGAGAAAATTATTGATAAAAGAGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCTTTGGTTGTTAACAAGACTGGGATAGTTGTGAGCCCTCTGATATCATTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCGTCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACATGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGACGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTTGAATACAAGCATTTAGACAAGCTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATATGACATCATCAGTTCCCTGAAGCTGAATAATCCTTATGTTACGGTTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGCGAGAAATTTCAAAAGAAGTCACTAGTGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTGGAGCAGATATTCAAGTCATTTGCAGAAGCAGGCATTGAGGCAGGCATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATCGCCTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGCTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTATTGTGGAGATGTGAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTGGCTGCTGAACGCTATTGTGTGCTGACAACTTGCAGAAGGAAGTTCTTGCTTGAATACTTTGGGGAAAAATTTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCAAGGAAGGAGCGTGACATGTCGAGAGAAGCATTTCTTCTAATGGCTTGCGTTCATTCATGCAGGGGCAGATGGGGCCTTAATATGCCCATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGACTGTTAGTGACATATACAGAACTATAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCGGAAATGCTTGGAGAAGAAGATACTGTAAACACACAAGAAGAATTCAAAACTTTATCCACTTCAGAATCAGAGGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAAGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGAGATCATTTTCTTCAAGTTCTTCAGAAACTGTCACAAGGATTAAACCTATCATTGGATGGGGAAGCAAGGGTCGCAACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCCAATAACCAACAAATCCAACAAGTTGACACCGGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAACTTTCCAGGTAGATCGGCTCCTATAAAAGATCAAACTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGCTAGATTCAGTGAGATGATAGGACTGACACAAGAGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAGAAGAAGTAAGTTATCAGCACATCAAGACTTATTTGACAATGCGAAACTGTGGAATATCCTTAGAAGCAGTTCAATCTGGAAGTAACCAGACTGAGAAAGATGGTGAACCTGCACACAATGCTTCAAATTTGTCAGATCCTACTTGTGAAGACGACATTTCTGCCAAAAGCTCAACAGAAAAACGCAACTTAGAAATTGATGAGGTACCTACTCTACCTGTCAATGGTTCTGAGGTACAGAAGCTTCCATTAGCGAGTGAGGGGGAATTCACAAACAAACGACAAAAAGTCGGTGAAACAAAGGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAAGGGGCTACATTGAGCGATGTTTTGGAGCATTTCAATGGATCCAGTGAAGATTCCGTGGTTGAACTGCTAAATTGCCTCGAGTGTGACTTTTCAATATATAGGAAAGGTAGCATGTATAGGGTTATGTAA 2730 0.4073 METMRSVLKKYFGFSDFRPYQKEVIEKIIDKRDCLVVMATGSGKSLCYQVPPLVVNKTGIVVSPLISLMQDQVMALKQRGVKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRYDIISSLKLNNPYVTVGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVTSGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKFSADRCGNCDNCKVSRKERDMSREAFLLMACVHSCRGRWGLNMPIDVLRGSRAKKILDVQFDKLPLHGLGKNYPANWWKALGHQLISQGYLKETVSDIYRTISVSSKGEQFLASSRPDYQPPLVLTLTAEMLGEEDTVNTQEEFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTKYGDHFLQVLQKLSQGLNLSLDGEARVATASLQTNEVRKVSPITNKSNKLTPAKFEAWKMWHEDGCSIHEIANFPGRSAPIKDQTVAEYLLEAAQEGLPFDWARFSEMIGLTQEIISEIQGAISKVGSTDKLKPIKNELPEEVSYQHIKTYLTMRNCGISLEAVQSGSNQTEKDGEPAHNASNLSDPTCEDDISAKSSTEKRNLEIDEVPTLPVNGSEVQKLPLASEGEFTNKRQKVGETKEVNSTKLKATESSVVEWLKNLDEGATLSDVLEHFNGSSEDSVVELLNCLECDFSIYRKGSMYRVM 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00042 909 Gene3D - 200 401 IPR027417 -
Pumo1g00042 909 MobiDBLite consensus disorder prediction 769 795 - -
Pumo1g00042 909 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Pumo1g00042 909 MobiDBLite consensus disorder prediction 769 805 - -
Pumo1g00042 909 Pfam Helix-turn-helix domain 659 755 IPR029491 -
Pumo1g00042 909 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pumo1g00042 909 CDD DEXHc_RecQ 5 199 - -
Pumo1g00042 909 Pfam HRDC domain 548 613 IPR002121 GO:0003676
Pumo1g00042 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 370 IPR001650 -
Pumo1g00042 909 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Pumo1g00042 909 SUPERFAMILY HRDC-like 542 618 IPR010997 GO:0000166|GO:0044237
Pumo1g00042 909 SMART hrdc7 543 623 IPR002121 GO:0003676
Pumo1g00042 909 Pfam RQC domain 403 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pumo1g00042 909 FunFam ATP-dependent DNA helicase 200 401 - -
Pumo1g00042 909 Pfam RecQ zinc-binding 349 400 IPR032284 -
Pumo1g00042 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Pumo1g00042 909 FunFam ATP-dependent DNA helicase 402 526 - -
Pumo1g00042 909 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Pumo1g00042 909 FunFam ATP-dependent DNA helicase 539 629 - -
Pumo1g00042 909 SMART ultradead3 13 208 IPR014001 -
Pumo1g00042 909 Gene3D - 402 527 IPR036388 -
Pumo1g00042 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Pumo1g00042 909 FunFam ATP-dependent DNA helicase 1 198 - -
Pumo1g00042 909 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Pumo1g00042 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 671 - -
Pumo1g00042 909 Gene3D HRDC domain 541 622 IPR044876 -
Pumo1g00042 909 ProSiteProfiles HRDC domain profile. 543 623 IPR002121 GO:0003676
Pumo1g00042 909 Gene3D - 1 198 IPR027417 -
Pumo1g00042 909 SMART helicmild6 245 326 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00042 Pumo-Chr1 854255 863086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00042 235 342 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 2.20e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00042 K03654 - gmx:100797777 1717.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00042 1 854255 863086 Pumo1g00042 1 854255 863086 ECH