Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00027 ATGGGAAGAAGACCGGCGAGGTGTTACCGGCAGATAAAGAACAAGCCGTACCCGAAGTCGCGGTTCTGCCGCGGCGTCCCGGACCCGAAGATCCGAATCTACGACGTGGGGATGAAGAAGAAGGGGGTTGACGAGTTCCCGTTCTGCGTGCACCTGGTCTCGTGGGAGAAGGAGAACGTCTCAAGCGAGGCCCTAGAGGCCGCGCGCATCGCCTGCAACAAGTACATGGCCAAGTTCGCGGGAAAAGACGCGTTCCACCTGCGCGTGAGGGTGCACCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCCGGGGCGGACAGGCTCCAGACCGGGATGAGAGGCGCGTTTGGGAAGCCGCAGGGGACGTGCGCTAGGGTTAACATTGGTCAGGTGCTGCTGTCGGTGAGGTGTAAGGATAGTAATAGTCATCACGCTCATGAGGCTCTTCGACGCGCCAAGTTCAAGTTCCCCGGTCGCCAGAAGATCATTGTTAGCAGAAAATGGGGATTTACCAAGTTCAGTCGAAGTGAGTATTTGAAGTTGAAGTCTGAGAACAGAATTGTGCCGGATGGGGTCAATGCCAAGGTTCTTGGTTGTCACGGACCTTTGGCAAATCGTCAGCCTGGAAGAGCTTTCTTACCAGCTACTGCTTAG 663 0.5641 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKFSRSEYLKLKSENRIVPDGVNAKVLGCHGPLANRQPGRAFLPATA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00027 220 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pumo1g00027 220 FunFam 60S ribosomal protein L10 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00027 Pumo-Chr1 709788 711043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00027 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.273 1.83e-144 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00027 K02866 - gmx:100779884 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00027 1 709788 711043 Pumo1g00027 1 709788 711043 ECH