Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00024 ATGGTTATGGTACTAAACCAGGAAAATATGAAGGCCAGCAAAGTTTACTCCAAATTTAATTGTCAATATCTTATTCCTTTCAGCAAACAACTCTCCATGAAGTTCCATTCTACTTCAGTGGCTTCTTTCCTTTTTCTCATAGTTATTCTTTTCCCTCTAGCTATTGCTGATCTAAGTTCAGATAAGCAAGCCCTTCTTGATTTTGCTAATGCTGTCCCCCACCGCCGAAACCTTATGTGGAATCCATCCACCTCAGTCTGTACATCTTGGGTAGGCATCACTTGCAATGAAAATAGAACTCGTGTTGTTAAAGTCCGGCTCCCTGGAGTTGGACTAGTTGGCACCATCCCATCCAATACACTTAGCAAGCTTGATGCTGTGAAAATTATTAGCCTTCGCTCCAACCTACTCAGTGGAAATCTTCCTGCTGACATTGCTTCTCTTCCCTCTCTTCAGTATCTCTACCTTCAGCATAATAACCTTTCTGGTGATATACCTGCCTCACTGTCTCCCCAACTTGTTGTACTCGATTTTTCATATAACTCCTTCACTGGTGTTATTCCGAAGACATTTCAAAATTTGTCAGAATTAACTAGTTTGAATCTCCAGAACAACTCCCTATCTGGACAGATACCTAATCTCAATGTCACTCAGCTCAAGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCAATTCCTAAAGCTCTTCAGATTTTTCCAAATTCTTCCTTTGAAGGAAACTCTCTCTTATGTGGACCACCTCTAAAGCCGTGCTCTGTGGTTCCCCCTACACCTTCTCCTTCCTCGGCTCCACCTCCATCAACTCCTGGAAGACAAAGCTCAAAAAACAGGTTGAGTAAAATAGCTATCATTGCAATTGCTGTTGGAGGAGCTGTGGTGCTATTCTTTGTTGCTCTTGTTATTGTTATTTGCTGTTTAAAGAAAGAAGATGACAGAGGCTCCAATGTAATTAAAGGGAAGGGTCCTAGTGGTGGTAGGGGTGAGAAACCAAAAGAAGAGTTTGGAAGTGGGGTTCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGAAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCGGCTGAAGTTCTAGGGAAGGGTAGTTATGGTACTGCATATAAGGCCATACTGGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGCAAGAAGGACTTTGAACAGCAGATGGAGATTATGGGAAGAGTTGGACAACACACAAATGTTGTGCCACTTCGTGCTTATTATTATTCAAAAGATGAAAAGCTTTTGGTATATGACTATGTACCAGGTGGCAACCTACACACACTCTTGCATGGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCTCGAATAAAAATATCCCTTGGAACAGCCAAAGGACTTGCCCACATTCATTCTGTTGGTGGTCCCAAATTCACACATGGAAATATTAAGTCCTCAAACGTCCTCCTCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGCCTTGCCCCACTTATGAATGTTCCTGCTACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGTAAACACTCTCATAAATCCGATGTGTACAGCTTTGGCGTCCTCCTTCTTGAGATGCTTACCGGGAAGGCTCCTCTCCAATCTCCGGGGCGTGATGATATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAAGAGTGGACGGCCGAAGTTTTTGATGTGGAGCTAATGAGGTACCGAAACATTGAAGAAGAAATGGTTCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGATGCCAGATATGAGACCTAGCATGGATGAAGTAGTGAGAATGATCGAAGAGATCAGGCAATCTGACTCAGAGAACCGACCATCTTCTGAAGAAAATAAATCTAAGGACTCAAATGTTCAGACTCCATAG 2001 0.4273 MVMVLNQENMKASKVYSKFNCQYLIPFSKQLSMKFHSTSVASFLFLIVILFPLAIADLSSDKQALLDFANAVPHRRNLMWNPSTSVCTSWVGITCNENRTRVVKVRLPGVGLVGTIPSNTLSKLDAVKIISLRSNLLSGNLPADIASLPSLQYLYLQHNNLSGDIPASLSPQLVVLDFSYNSFTGVIPKTFQNLSELTSLNLQNNSLSGQIPNLNVTQLKLLNLSYNHLNGSIPKALQIFPNSSFEGNSLLCGPPLKPCSVVPPTPSPSSAPPPSTPGRQSSKNRLSKIAIIAIAVGGAVVLFFVALVIVICCLKKEDDRGSNVIKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHTNVVPLRAYYYSKDEKLLVYDYVPGGNLHTLLHGGRTGGRTPLDWDSRIKISLGTAKGLAHIHSVGGPKFTHGNIKSSNVLLNQDNDGCISDFGLAPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYRNIEEEMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00024 666 Gene3D Phosphorylase Kinase; domain 1 339 446 - -
Pumo1g00024 666 FunFam pollen receptor-like kinase 1 339 446 - -
Pumo1g00024 666 Gene3D Ribonuclease Inhibitor 214 260 IPR032675 -
Pumo1g00024 666 MobiDBLite consensus disorder prediction 323 346 - -
Pumo1g00024 666 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Pumo1g00024 666 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Pumo1g00024 666 Gene3D Ribonuclease Inhibitor 58 213 IPR032675 -
Pumo1g00024 666 ProSitePatterns Protein kinases ATP-binding region signature. 377 408 IPR017441 GO:0005524
Pumo1g00024 666 PANTHER OS05G0588300 PROTEIN 44 654 - -
Pumo1g00024 666 MobiDBLite consensus disorder prediction 640 666 - -
Pumo1g00024 666 Pfam Protein kinase domain 374 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00024 666 ProSiteProfiles Protein kinase domain profile. 371 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00024 666 MobiDBLite consensus disorder prediction 332 346 - -
Pumo1g00024 666 FunFam Leucine-rich repeat receptor-like protein kinase 60 170 - -
Pumo1g00024 666 MobiDBLite consensus disorder prediction 640 657 - -
Pumo1g00024 666 FunFam Leucine-rich repeat receptor-like protein kinase 171 259 - -
Pumo1g00024 666 SUPERFAMILY L domain-like 60 259 - -
Pumo1g00024 666 Pfam Leucine rich repeat 115 161 IPR001611 GO:0005515
Pumo1g00024 666 Pfam Leucine rich repeat 171 207 IPR001611 GO:0005515
Pumo1g00024 666 MobiDBLite consensus disorder prediction 262 282 - -
Pumo1g00024 666 SUPERFAMILY Protein kinase-like (PK-like) 375 649 IPR011009 -
Pumo1g00024 666 Gene3D Transferase(Phosphotransferase) domain 1 447 665 - -
Pumo1g00024 666 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 447 654 - -
Pumo1g00024 666 CDD STKc_IRAK 377 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00024 Pumo-Chr1 647572 652472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00024 18 664 Receptor kinase-like Gene Family AT5G58300 66.107 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo1g00024 Pkinase 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00024 - - gmx:100796171 1188.71