Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00019 ATGAGTGACACAAAACAACCTTTCATGTCCGTACAACCAACCATGAAGCTCCACCCCTTTAACCCACAAACCCCAAGCTCAATTTTTGACGGCGACCCACCATGCAAAACCGCCGGAAAAACCAAACCACCGCACAAGAAGCTCCTCCGGGTCATTCTCACCGACCACGACGCCACCGATTCCGACTCCTCCGGCGACGATGAAGACCCAAAAAACACACCAAAACACAAAAAAGTGAAAGGAAAAATCACCCACATCACCATAAACCTTCCTTTGTTCTCAGAAACCTCAACACCAACACCAACACAAACACCCTCTTCATCTTCTTCTCTTGACCCGACCCGTTTAGCCCGACCAGTGAAACGACCCGCCGTCCCTCGACGCCGGAGTAAGTTCCGGGGCGTCCGGCAACGGCCGTGGGGGCGGTGGACCGCAGAGATCCGCGACCCGACCCGGAGAAAACGGCTCTGGCTCGGCACCTTCGACACGGCGGAGGAAGCCGCCGCCGTGTACGACGAGGCCGCCGTGAAGCTCAAGGGCCCCAACGCCGTCACCAACTTCCCCCTCGCCGCCGCCGGAAAAACGGAACACGATACCACGCCGCCGGAGCCGGAGACGGCGTTCTCCGGCGAAGGTTTTTCATCCCCGACGTCCGTCCTCACTTACTGCGACGCAGACTCGACGCCGTTTGACGGGTTCCGTTACGGCGTGGTCGATGCGTTCGGGTTTGACATCGACGCGCCGTTTAGTTTGACGGACGTTAACTTAGGGGTGCTGAGTCAGCGGTTCGGGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCGAGTTAA 846 0.5816 MSDTKQPFMSVQPTMKLHPFNPQTPSSIFDGDPPCKTAGKTKPPHKKLLRVILTDHDATDSDSSGDDEDPKNTPKHKKVKGKITHITINLPLFSETSTPTPTQTPSSSSSLDPTRLARPVKRPAVPRRRSKFRGVRQRPWGRWTAEIRDPTRRKRLWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPLAAAGKTEHDTTPPEPETAFSGEGFSSPTSVLTYCDADSTPFDGFRYGVVDAFGFDIDAPFSLTDVNLGVLSQRFGKEEFGEFDPDEFLTWPS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00019 281 MobiDBLite consensus disorder prediction 1 133 - -
Pumo1g00019 281 Pfam AP2 domain 130 180 IPR001471 GO:0003700|GO:0006355
Pumo1g00019 281 CDD AP2 130 188 IPR001471 GO:0003700|GO:0006355
Pumo1g00019 281 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
Pumo1g00019 281 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Pumo1g00019 281 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Pumo1g00019 281 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Pumo1g00019 281 PIRSF PTI6 14 281 IPR017392 GO:0003700
Pumo1g00019 281 MobiDBLite consensus disorder prediction 89 114 - -
Pumo1g00019 281 MobiDBLite consensus disorder prediction 48 75 - -
Pumo1g00019 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 46 222 - -
Pumo1g00019 281 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Pumo1g00019 281 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Pumo1g00019 281 MobiDBLite consensus disorder prediction 1 30 - -
Pumo1g00019 281 FunFam Ethylene-responsive transcription factor 2 130 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00019 Pumo-Chr1 627305 628799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00019 47 222 AP2-EREBP Transcription Factor Family AT4G27950 41.361 1.03e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo1g00019 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00019 K13434 - gmx:100794593 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00019 1 627305 628799 Pumo1g00019 1 627305 628799 ECH