Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00017 ATGTCGTATGTGCCTCCGCACCTCAGAAACGCCACCTCCACCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACCACCACCACCACCACAAGCTCGCATTCTCATCCAACAACAACAACAACACCAATTGCTCTCCCTCTCTCTCCTCCTTCCACAATGCCTCTCGACGGAGCTCCGCCGCGCCTCCCTCGCCGCGGATTCTCGCCGCCCCCGACACCGTCTTCCCTCAATGGCAACCCTCCGAACGCGTTTCGCGCATGACTCCCGAGCAGATTGAAGAGGTCCGATCCCGGCTTAATCTTGATGTTACTGTCGCATCTGACTCTCCTCCTGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGCATCTAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGACCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGTCCAACCTCCAATTCGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCTGGAGTTGAAATCGCAGTTGCCACCCCTGGAAGATTCATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTCGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGAATTAGCAAAGGAGTACTTAGCTAGCCCGGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACGACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCGCAGGCAGAAAAAAGTGGTCATCCATTGCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGATGTGATGAAGTTGCTGAGGCATTGGTAGCTCAAGGTTTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAACATTTTGGTTGCCACTGATGTCGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATCTAGATCTACCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTCATGGCAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACACACTGACATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAACATTGAAGATAAATATAAATTCATGATTACTGCCACAAACATTAAAAGAGAGGGTGCAGCAGATAGTGCCTGGGATGATTAA 1701 0.4656 MSYVPPHLRNATSTTVATARTPSVTLDNNHHHHHKLAFSSNNNNNTNCSPSLSSFHNASRRSSAAPPSPRILAAPDTVFPQWQPSERVSRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHLSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLVQPPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEELAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKSGHPLPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLMANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMITATNIKREGAADSAWDD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00017 566 MobiDBLite consensus disorder prediction 27 74 - -
Pumo1g00017 566 SMART ultradead3 140 343 IPR014001 -
Pumo1g00017 566 Gene3D - 81 332 IPR027417 -
Pumo1g00017 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 510 IPR001650 -
Pumo1g00017 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Pumo1g00017 566 Pfam DEAD/DEAH box helicase 145 316 IPR011545 GO:0003676|GO:0005524
Pumo1g00017 566 MobiDBLite consensus disorder prediction 38 64 - -
Pumo1g00017 566 Coils Coil 510 530 - -
Pumo1g00017 566 SMART helicmild6 388 469 IPR001650 -
Pumo1g00017 566 Coils Coil 350 370 - -
Pumo1g00017 566 Coils Coil 207 227 - -
Pumo1g00017 566 Gene3D - 334 528 IPR027417 -
Pumo1g00017 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 274 282 IPR000629 -
Pumo1g00017 566 Pfam Helicase conserved C-terminal domain 352 469 IPR001650 -
Pumo1g00017 566 CDD DEADc 132 329 - -
Pumo1g00017 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 489 IPR027417 -
Pumo1g00017 566 CDD SF2_C_DEAD 340 478 - -
Pumo1g00017 566 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 89 521 - -
Pumo1g00017 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 328 IPR014001 -
Pumo1g00017 566 FunFam probable ATP-dependent RNA helicase DDX17 81 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00017 Pumo-Chr1 599224 607157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00017 121 491 Eukaryotic Initiation Factors Gene Family AT1G72730 36.000 6.87e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00017 K12823 - gmx:100818387 1019.61