LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00015	ATGTTTCTAGCCGTTATTCGAGCGCGAGCCACAGCCGCGCCGTTAAACCCGGCTTACACAGCGGAAGAGTTCGAGTTTTACTTATCCGACTCCGAGTCCAAGCTTCTACTAACATCAACAGAAGGAAACAAGCCGGCTCAAGCCGCGGCTTCAAAGCTCAACATCCCTCACGCCGCGGCCTCGATCACCCAAGCCGAGAACGAAGAAGCCGAGCTGAGTCTCACGTTGAGCCACTCCGATTCGGTGGACTCGGTTGAGTCACTCGTTAACGACCCTGCTGACGTGGCGCTTTTCCTTCACACTTCCGGCACCACGAGCCGTCCCAAGGGGGTGCCGCTGACTCAGCACAACTTGCTCTCTTCGGTGCGGAACATCGACTCGGTGTACCGACTCACTGAGTCCGACTCGACGGTGATCGTGCTTCCGCTCTTCCACGTGCACGGCTTGATCGCCGGGCTGCTGAGCTCCCTCGGCGCCGGCGCGGCGGTGGCGCTTCCGGCGGCGGGGAGGTTCTCCGCCTCGGCGTTCTGGAAGGACATGGTCAAGTACAACGCCACGTGGTACACCGCGGTTCCTACCATACACCAGATCATACTGGATCGCCACTCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATCCGAAGCTGCAGCGCCTCGCTTGCACCGGCTATTCTCCGTAAACTCGAGGAGGCTTTCGGTGCCCCCGTGTTGGAGGCTTATGCGATGACGGAAGCGTCGCATTTGATGGCTTCGAACCCTTTGCCGCAAGATGGGCGCCACAAGGCCGGGTCGGTTGGAAAGCCCGTGGGTCAGGAAATGGATATATTGGACGAATCGGGTCGGGTCCAAGAGGCTGGAGTCAGTGGAGAGGTTTGCATTCGGGGACCCAATGTGACGAAAGGATATAAAAATAACGTGGCAGCTAATACGGCGTCGTTTCTGTACGGTTGGTTTCATACCGGTGACATTGGATACTTTGATTCTGATGGGTATTTGCATCTCGTGGGTCGAATCAAGGAGCTAATCAACCGAGGAGGTGAAAAGATATCACCAATAGAAGTGGATGCTGTCCTTCTTTCACATCCAGGCATTGCTCAAGCAGTTGCTTTCGGAGTGCCTGATGCCAAGTATGGGGAGGAGATATATTGTGCTATCATCCCAAGAGAAGGATCAAACATTGATGAGGCAGAGGTGCTAAGCTTTAGCAAGAAGAACCTTGCATCCTTCAAAGTCCCCAAAAAGGTCTTCATTACTGATTCTTTGCCCAAGACTGCCACCGGCAAGATTTTGCGCCGTCTTGTGGCAGAACACTTCGTCTCTCAAATTTGA	1338	0.5501	MFLAVIRARATAAPLNPAYTAEEFEFYLSDSESKLLLTSTEGNKPAQAAASKLNIPHAAASITQAENEEAELSLTLSHSDSVDSVESLVNDPADVALFLHTSGTTSRPKGVPLTQHNLLSSVRNIDSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHSNNPEPVYPRLRFIRSCSASLAPAILRKLEEAFGAPVLEAYAMTEASHLMASNPLPQDGRHKAGSVGKPVGQEMDILDESGRVQEAGVSGEVCIRGPNVTKGYKNNVAANTASFLYGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPGIAQAVAFGVPDAKYGEEIYCAIIPREGSNIDEAEVLSFSKKNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQI	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00015	445	PANTHER	ACYL-COA SYNTHETASE	1	442	-	-
	Pumo1g00015	445	CDD	FACL_fum10p_like	1	439	IPR045310	GO:0016874
	Pumo1g00015	445	FunFam	4-coumarate--CoA ligase 2	343	444	-	-
	Pumo1g00015	445	Pfam	AMP-binding enzyme	1	347	IPR000873	-
	Pumo1g00015	445	ProSitePatterns	Putative AMP-binding domain signature.	98	109	IPR020845	-
	Pumo1g00015	445	Gene3D	-	1	340	IPR042099	-
	Pumo1g00015	445	Pfam	AMP-binding enzyme C-terminal domain	356	431	IPR025110	-
	Pumo1g00015	445	Gene3D	-	341	443	IPR045851	-
	Pumo1g00015	445	SUPERFAMILY	Acetyl-CoA synthetase-like	2	443	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00015	Pumo-Chr1	574506	577348	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00015	2	445	Monolignol Biosynthesis Gene Families	AT4G05160	30.937	7.20e-53	184

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00015	K22133		-	gmx:100817853	783.867