Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00013 ATGGGTTCCGACATTTGCGTTGTGAATGGTTCGTGCACTCACGAATGGAGAAAGGGGTGGTCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTGTGGAGGAGTGGAAGGGTGAAATCCTTGACCCGATATCTGCCTACGAGAATTCAGTTTTCTGTAATAAATTCCACCGCCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGATGCATAGTATCTAGATCTTTGTTCGATTATCTTGACTTTGGTGGCATAGGTTGTATCAGCTGTGTAAATACTACCCAACTTAGTATGATGAGGAATACCGAAAATCCAAATTTGTCTGTTTCATCGATAAAAAATAATGCGGGTGATCAGCATTCTGCTCATTTTGATGGCAGACTGTTTGCGGGTGGTGTTGAAGAAGGAAAGCTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCATTGGAATCATGCTCAAAGAGATGGCATAATTGCACATCGTGGGCAAAACAACCAAGAAGCCAAGTGTTCATTCAGGGAAGGGGACATTGGATTTTCAAAATTGATGAAACCATCTGTTCAGTCATTAACATTTGCTGCGTTAGAAAATAATAGGCCAACATGGGAGATTAAAAACATGCATGAATCAAATGCACAGCCATCTTTGAGTATGTATCTGGGAAATGCATCAGGGAACAACTCTGTCCCACCTTCTGCTGCAGAGGCTGTAGAAGGAAGACTTGAGGGAAAAACATCTCCCTTTCATCAAGGGCAAAGATCTCGCCCTATATTTCCTAAACCGTTGAAGAATGGGCTTACCATGAATGTGGGGGAAACAGATAAAGGTACAATTTCTCAATCACGTGTTGCTCGGCCACCTGCAGATGGCAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATCACTGATCAAGAGCTGGAGCGATTGGCTGGAGATTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCCTATTTCACAATCTGAAGGAGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGCAATTACATGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGGCAAACTTGTTATGGGTTTTAGAAAGGCATCAAATTCTACAGATACGCAGGATGCCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCACCTCTTCTGGAACTGAGAATCTGCCATCAGGAAGTAATCATGCCAATCTTCTCCATTCATTGACAGGGAATGTGGAACCTCACTTAAATGGACATACAGAACATCTGCATTTGGGTACTGGAACTGCTGGATTGCTTAAAACTGAAAATAATGAGATGACAAACAATAGTTCACTACAACAACAAATTTTGGTTTTAGAGAAGAAAAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTAATTGATAATGAAGATGCCATGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTGCTTCGTCCTCCTCCTAGTGTCAAACCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCTGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATTCAAGCAGGTCTTCATGCTCTGCGCCAGAGGAGCTAAGTTCAAGGGAATTAGAAAATCTTCTGAAAACCAACAAAGATATTAAGAAGCGGCGAATTGTAGAAAGCAGCAAGTCAATCCAAGAACAAGAGCCTACTGGCCTGGATGCTCTTGCCAGTGCAGCAGTTCTAGGAGAAAATCTCGTTGACACTGCCGAATCGTCAGCTGGGGCCACCACCAAACATCCTAGACACCGTCCTGGCTGCTCTTGCATCGTGTGCATTCAGCCCCCAAGTGGAAAGGGGAGACACAAGCCGACATGCACATGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTAAGAAAGAAGAAACGGCAATCCTGA 2283 0.4433 MGSDICVVNGSCTHEWRKGWSLRSGGFAQLCCKCGFVEEWKGEILDPISAYENSVFCNKFHRQQTGWRECNFCNKPIHCGCIVSRSLFDYLDFGGIGCISCVNTTQLSMMRNTENPNLSVSSIKNNAGDQHSAHFDGRLFAGGVEEGKLMQFCKIIEASESSHWNHAQRDGIIAHRGQNNQEAKCSFREGDIGFSKLMKPSVQSLTFAALENNRPTWEIKNMHESNAQPSLSMYLGNASGNNSVPPSAAEAVEGRLEGKTSPFHQGQRSRPIFPKPLKNGLTMNVGETDKGTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLHAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNSAKGTTSSGTENLPSGSNHANLLHSLTGNVEPHLNGHTEHLHLGTGTAGLLKTENNEMTNNSSLQQQILVLEKKRTRNIGPKSKRLLIDNEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDSSRSSCSAPEELSSRELENLLKTNKDIKKRRIVESSKSIQEQEPTGLDALASAAVLGENLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00013 760 MobiDBLite consensus disorder prediction 438 478 - -
Pumo1g00013 760 Gene3D - 317 444 IPR015300 -
Pumo1g00013 760 Pfam CW-type Zinc Finger 605 647 IPR011124 GO:0008270
Pumo1g00013 760 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Pumo1g00013 760 MobiDBLite consensus disorder prediction 259 311 - -
Pumo1g00013 760 ProSiteProfiles Zinc finger CW-type profile. 600 650 IPR011124 GO:0008270
Pumo1g00013 760 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Pumo1g00013 760 Gene3D - 603 659 - -
Pumo1g00013 760 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Pumo1g00013 760 CDD B3_DNA 337 438 IPR003340 GO:0003677
Pumo1g00013 760 SMART B3_2 339 440 IPR003340 GO:0003677
Pumo1g00013 760 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 760 - -
Pumo1g00013 760 SUPERFAMILY DNA-binding pseudobarrel domain 337 439 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00013 Pumo-Chr1 544410 551177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00013 1 759 B3 DNA Binding Superfamily AT2G30470 51.369 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo1g00013 B3 4.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00013 K09287 - gmx:100789848 1429.08