Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00005 ATGGTTTTGGGGATACCTCTCTTTGTCCTATTTGCATTCACTTTGAGTTTAGCTTTTCTACTCTCAAAAAGTCAAACAAAAAATGTTCCAAAAGGGTCTCTGGGGTACCCTATAATTGGAGAGACACTTAGTTTTCTTAAAGCACAGAGACAAGATAAGGGTTCTGATTGGTTGGAAGAACGGATATCTAAGTATGGTCATGTCTTCAAAACCTCCTTAATGGGGTCCCCTACAGTGTTTGTCATTGGACAAGCAGGAAACAAATTTGTCCTTGGTTCACCAGATGATGTGCTTTCTGCTAAGAAACCCCTCACCCTGCGAAAGATACTTGGAAGGCAAAGCTTAGTTGAACTCACAGGACCAAGATACAGGTTAGTCAAAGGGGAAATGTTGAAATTCTTGAAACCTGAATGCCTTCAGAACTATGTCAAAAAGATGGATGAATTGGTGAATGCTAAATTACTGAGAGAATTCAGAGAGAATGAAACAATTGGAGCTGTGGTCTTCATGAAGAAACTGTCCTATGATATAGCATGCAATGTATTGTTTGACATTAACGATGAGAACACTAGGGAGGCTTTGTTTGTAGATTTTACTTTAGCATTTAAAGCAATTCATTCTCTTCCCATCAATCTCCCTGGTACCACATTTTGGAGAGGCCAAAGAGCCAGGGAAAGAATTGTTGACAGGATGCTTCCTATTATGAACAAAAGAAGGGAGGACCTGTCAAAAGGAGTTCTAAGCTCTACAAATGACATGCTTTCCTGCCTGCTTGCACTAAGGGATGAAAATCATCAACCTCTAGCTGATGATTTAATCACTGACAATTTTATTTTTTTATTTGTTGCTAGTCATGACACATCTGCCACTCTTATGAGCTTGATGATATGGAAGTTATCTAGAGATCGAGAGGTTTACAATAAAGTTTTAGAAGAACAAATGGAAATTATAAAGCAAAGGGAAGGATCAGAAGAGAGGCTAACATGGGCAGAGATACAAAAGATGAAATATACATGGAGAGTTGCTCAGGAATTGATGAGGATGATCCCTCCCTTGTTTGGCAGCTTTAGGAAAGCACTTAAAGATACTAACTATGAAGGATTTGACATACCAAAAGGGTGGCAGGTGTATTGGGCAGCATATGGAACGCATATGAACGATGATATATTCGAGAATCCACACAAGTTTGATCCATGTCGTTTTGAGAATCCAACCAAGCCAATTCCACCTTATTCTTACCTTCCATTTGGTGCAGGGCTTCATTATTGCATAGGAAACGAGTTTGCCAGGATTGAGACCTTGACTACTATTCACAACTTTGTAAAAATGTATGAATGGTCTCAAGTAAACCCAGAGGAAGCAATCACTCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATTAAGATCAAACCCAGATGTAGTATTTCTTAA 1437 0.3932 MVLGIPLFVLFAFTLSLAFLLSKSQTKNVPKGSLGYPIIGETLSFLKAQRQDKGSDWLEERISKYGHVFKTSLMGSPTVFVIGQAGNKFVLGSPDDVLSAKKPLTLRKILGRQSLVELTGPRYRLVKGEMLKFLKPECLQNYVKKMDELVNAKLLREFRENETIGAVVFMKKLSYDIACNVLFDINDENTREALFVDFTLAFKAIHSLPINLPGTTFWRGQRARERIVDRMLPIMNKRREDLSKGVLSSTNDMLSCLLALRDENHQPLADDLITDNFIFLFVASHDTSATLMSLMIWKLSRDREVYNKVLEEQMEIIKQREGSEERLTWAEIQKMKYTWRVAQELMRMIPPLFGSFRKALKDTNYEGFDIPKGWQVYWAAYGTHMNDDIFENPHKFDPCRFENPTKPIPPYSYLPFGAGLHYCIGNEFARIETLTTIHNFVKMYEWSQVNPEEAITRQPMPYPSMGLPIKIKPRCSIS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00005 478 PRINTS E-class P450 group IV signature 407 423 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PRINTS E-class P450 group IV signature 384 402 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PRINTS E-class P450 group IV signature 335 351 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PRINTS E-class P450 group IV signature 56 79 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PRINTS E-class P450 group IV signature 423 441 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PANTHER CYTOCHROME P450 26 28 463 - -
Pumo1g00005 478 CDD CYP90-like 61 473 - -
Pumo1g00005 478 Pfam Cytochrome P450 30 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 416 425 IPR017972 GO:0005506|GO:0016705
Pumo1g00005 478 Gene3D Cytochrome P450 21 474 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 FunFam Taxadiene 5-alpha hydroxylase 20 474 - -
Pumo1g00005 478 PRINTS P450 superfamily signature 340 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PRINTS P450 superfamily signature 423 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PRINTS P450 superfamily signature 414 423 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 PRINTS P450 superfamily signature 283 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Pumo1g00005 478 SUPERFAMILY Cytochrome P450 27 474 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00005 Pumo-Chr1 292164 294754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00005 7 449 Cytochrome P450 AT4G19230 33.111 8.33e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00005 - - gmx:100790209 885.945