Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00004 ATGGCCACACAGACGCAAGATCCACCTTCAAACCCTAACCCTAATCCCAATGCCACGTCAGCAACGCCATCTTCTTCCTTATTCTTCCGCGCCGGCGGCGGAAACGGCGCTTCCGTCGCTCCCGTCGCCGGCTCCGGCGAGTCGCACTCGCACCACCGGAGGGCGCACTCGGAGGTCAGTTTCCGGCTGCCGGACGACATGATGGACCTGTCGCCGTCCGATCCGTTCAACGGCGGATCCTCGACGGCGAGCCTGGAGGAGATCGGATCCGAGGACGACCTCTTCTCCACCTACATTGACGTCGAGAAGCTCGGAGGCGGCGCCAACGGTGCCGGTCGTGGCGGAAACGGATCGGATCAGAGCGGTTACGGAAATGGCGCCGGCACGAGCGGCCACAACGACGGCGAGAAGAGTCCGAGCGCCGCCGCCGCGGCAGCGAGGTCGAGACACCGGCACAGTAGCTCCGTCGACGGTTCCACGTCGACGAGCATGTTCGGAGAGATCATGGAGGCGAAGAAAGCCATGCCTCCGGATAAGCTCGCGGAGCTTTGGAACATTGATCCAAAGCGTGCCAAGAGAATACTGGCTAATCGGCAATCTGCTGCACGTTCAAAAGAAAGAAAGGCACGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAGACTGAAGCTACAACACTTTCTGCCCAATTGACATTGTACCAGAGGGATACAACTGGTCTGAGTTCTGAAAATACTGAGCTTAAGCTCCGTCTACAAGCCATGGAACAACAAGCACAGCTGCGTGATGCTCTTAATGATGCATTGATGAAAGAAGTTGAAAGGCTTAAGATTGCTACTGGAGAGGCATTGAACCAATCTGAGTCTTTTAATCTGGGAATGCACCAGCTGCCATATGCAGGGTCAAACTTCTTTTCAATCCCACCACATTCAGGTCCTCATGGTCACCAGAACATGCAGATGCCTCCATTTGGTCACTCCCAATCTACCGTGCCAACTCATCAGCTGCAACAAACAAATTCTCACCAAATGTCAGATATATTGCAAAATGACCAGCTTGGTCGTTTGCAGGGACTTGACATTAGTAGCAAAGGATCACCCATTGTGAAGTCTGAAGGCCCCTCAATATCTGCAAATGAGAGTAGCACCACATTTTGA 1164 0.5378 MATQTQDPPSNPNPNPNATSATPSSSLFFRAGGGNGASVAPVAGSGESHSHHRRAHSEVSFRLPDDMMDLSPSDPFNGGSSTASLEEIGSEDDLFSTYIDVEKLGGGANGAGRGGNGSDQSGYGNGAGTSGHNDGEKSPSAAAAAARSRHRHSSSVDGSTSTSMFGEIMEAKKAMPPDKLAELWNIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDALNDALMKEVERLKIATGEALNQSESFNLGMHQLPYAGSNFFSIPPHSGPHGHQNMQMPPFGHSQSTVPTHQLQQTNSHQMSDILQNDQLGRLQGLDISSKGSPIVKSEGPSISANESSTTF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00004 387 MobiDBLite consensus disorder prediction 309 344 - -
Pumo1g00004 387 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700|GO:0006355
Pumo1g00004 387 MobiDBLite consensus disorder prediction 17 31 - -
Pumo1g00004 387 MobiDBLite consensus disorder prediction 360 387 - -
Pumo1g00004 387 Coils Coil 205 232 - -
Pumo1g00004 387 MobiDBLite consensus disorder prediction 323 344 - -
Pumo1g00004 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700|GO:0006355
Pumo1g00004 387 SMART brlzneu 185 249 IPR004827 GO:0003700|GO:0006355
Pumo1g00004 387 MobiDBLite consensus disorder prediction 114 136 - -
Pumo1g00004 387 MobiDBLite consensus disorder prediction 370 387 - -
Pumo1g00004 387 FunFam probable transcription factor PosF21 188 241 - -
Pumo1g00004 387 MobiDBLite consensus disorder prediction 47 63 - -
Pumo1g00004 387 Pfam bZIP transcription factor 189 247 IPR004827 GO:0003700|GO:0006355
Pumo1g00004 387 Gene3D - 188 241 - -
Pumo1g00004 387 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 375 - -
Pumo1g00004 387 MobiDBLite consensus disorder prediction 103 163 - -
Pumo1g00004 387 MobiDBLite consensus disorder prediction 1 89 - -
Pumo1g00004 387 SUPERFAMILY Leucine zipper domain 189 240 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00004 Pumo-Chr1 281826 285152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00004 9 387 bZIP Transcription Factor Family AT2G40620 51.122 1.97e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo1g00004 bZIP_1 3.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00004 - - gmx:100775607 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00004 1 281826 285152 Pumo1g00004 1 281826 285152 ECH