Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00002 ATGGACAGCGACATTTCCCGGTGGATCCTGGAGTTTCTCCTCCGCACTTCCGTCCCCGATTCTCTCATCCAAAAAACCCTAACCGCTCTCCCTCTCTCCGGCGCTGATTCCCGTCTCAAGAAAACCCTCCTCCTCCGCACCCTCCACTCCCTCCTCCTCACCGCTTCCCTCTCGGAATCCGTACTCAACATCCTCGAACTCCTCGAAGACCTCGACACCAATGCTCCTGTCTCCGACCGGCTCCGCCGCGCGTACTGTGCAGTCGCCGTGGAGTGCAGCGTCAAGTACCTCGCCGCGTGCCCCGACGACTCCGCCGGAGAGTACGCCGGCGCGTTGCAGCGTATCTGGCGCGGCCGCGTGGCGGCGCTGGAGGCGCGCCGGAGCGGGCTGGTCTCTGGCGAGTTGGCGCGGTGGCGCGACGACGTCGAGGCCGCGATGGTGGAATCTAGGATTCGCGAGAAGCTGGCGGGTTTGAATAGCAGGAGCGACGCGATGAATGAGGTGAGGGCGTATTTGAAGGAAGCGTGGGAAACGATGGGGCCTTCATTTTTGGAAACGGTTGCGGCGATGTCGAAGGAGGGTGTAGGTGCTCGTGATAATGATAATGATAGTGATAGTGATAATGATAGTGATAATGATGATGATCATGATGCATACATGGAGGATGTGGCAATGCATGATGAGAATCAGGGCAAGGAACCATTGGAAGAGAGAATTGATGCGAATCAGGAAGTGGGTGGGTGTGACTCAACTCCTCAGAGAGATAAAGTAGCAATTCAGAAGCGGAATCCTCAGCTTAAACATAGACACTCTGCACTTCGTGCATGTCATAGGGGAGTTAAAATATCTGAACCGGAGGAAGTGGAGTCAGCAAAATCGTGGAGCAAACATGATCCTGTGCCTAGTGCTGAAGTTAGAAAAGTTCGGGAGTCCCTTAAATCAAGTTCTATGGAGTTACGAGCATTGGTCAAAGATCCTCTTCCCGAAGCATTGCATATATCAGAAGTTGTAAGATCCAAATTGGCAACAAGTGATACAAAAATTGAGGCACCTACTGAAAACCAGAGTGAAGATGTAGATGTACCAGATCCAAATGTTTGCCAGACTATTGTACTTTTTCAGCCCAATGATGCCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTAATATTCATCAACCCAACTTAATGGAACGGAACAGAAGTGCTCGTACCTTTGAGTGGGATGATTCAATAGACAACTCGCCACAAGCAAGACAGCCAAGGAGGAGGAAAAGGAAATGGAGTTCATTGGAAGAGGAAACACTAATGGCTGGCGTAAAAATGTTTGGAGAAGGAAACTGGGCTACAATCCGAAGTTTTTATAGTAACATATTTGAAAATAGAAGTGGAGTTGATCTGAAGGACAAATGGAGAAACATGATACGGTGA 1431 0.501 MDSDISRWILEFLLRTSVPDSLIQKTLTALPLSGADSRLKKTLLLRTLHSLLLTASLSESVLNILELLEDLDTNAPVSDRLRRAYCAVAVECSVKYLAACPDDSAGEYAGALQRIWRGRVAALEARRSGLVSGELARWRDDVEAAMVESRIREKLAGLNSRSDAMNEVRAYLKEAWETMGPSFLETVAAMSKEGVGARDNDNDSDSDNDSDNDDDHDAYMEDVAMHDENQGKEPLEERIDANQEVGGCDSTPQRDKVAIQKRNPQLKHRHSALRACHRGVKISEPEEVESAKSWSKHDPVPSAEVRKVRESLKSSSMELRALVKDPLPEALHISEVVRSKLATSDTKIEAPTENQSEDVDVPDPNVCQTIVLFQPNDANLGKKSSVHCSNIHQPNLMERNRSARTFEWDDSIDNSPQARQPRRRKRKWSSLEEETLMAGVKMFGEGNWATIRSFYSNIFENRSGVDLKDKWRNMIR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00002 476 CDD SANT_TRF 426 476 - -
Pumo1g00002 476 Pfam Myb-like DNA-binding domain 425 474 IPR001005 -
Pumo1g00002 476 Gene3D - 416 476 - -
Pumo1g00002 476 MobiDBLite consensus disorder prediction 195 217 - -
Pumo1g00002 476 MobiDBLite consensus disorder prediction 243 272 - -
Pumo1g00002 476 SMART sant 424 476 IPR001005 -
Pumo1g00002 476 MobiDBLite consensus disorder prediction 407 427 - -
Pumo1g00002 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 420 476 IPR017930 -
Pumo1g00002 476 MobiDBLite consensus disorder prediction 342 361 - -
Pumo1g00002 476 SUPERFAMILY Homeodomain-like 421 475 IPR009057 -
Pumo1g00002 476 ProSiteProfiles Myb-like domain profile. 420 475 IPR001005 -
Pumo1g00002 476 PANTHER MYB TRANSCRIPTION FACTOR 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00002 Pumo-Chr1 268530 272904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00002 428 475 Single Myb Histone (SMH) Gene Family AT1G15720 47.917 1.29e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo1g00002 Myb_DNA-binding 8.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00002 - K11111 gmx:100791258 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00002 1 268530 272904 Pumo1g00002 1 268530 272904 ECH