Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo199g00007 ATGAACAGGGGAATTGAAGTTCTTTCTCCAGCCTCCTACCTCCAGAGTTCCAATTGGCTGTTCCAAGAAAGCTTGGGGACCAGGTGGACTCCACAGGAGAACAAGCTCTTTGAGAATGCTTTGGCTGTGTATGATAAGGACACTCCAGACCGGTGGCTGAAGGTGGCAGCCTTGATTCCTGGCAAAACTGTTGGTGATGTGATCAAACAGTATAGGGAACTTGAAGAAGATGTGAGTGTCATTGAATCTGGGTTTATCCCAGTTCCAGGGTACACTGCTGATTCCTTCACATTGGAGTGGGTCAACAATCAAGGATTTGATGGGTTCAGGCAGTTTTATAGTGTTACTGGCAAAAGGGGTGCTTCCACTAGACCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTAAAGAGGAGCACAGGCAATTTCTGATGGGTCTAAAGAAGTATGGCAAAGGAGACTGGAGAAACATCTCTCGCAATTTCGTGACCACAAGAACACCAACTCAGGTTGCGAGTCATGCTCAGAAGTATTTCATCAGGCAACTAACTGGTGGAAAGGATAAGAAGAGATCAAGTATCCATGACATCACAATGGTCAATCTCCCAGAAGCAAAATCTCCTTCATCAGAGAGTAACAGACCCCCTTCGCCGGATCACTCAGTGAAGGATGTGAATCCACCCCAGAATCAGAGATTGTCTACCACCATGGTTGTTAAACAGGAACATGATTGGAAATTGCCATGTGAAACTGTGCCTATGCTTCTCAATTCCACAAATGGAAATATGTTCATGGCACCACTGTGTGGGATTTCTTCATATGGGTCTAAACCAATCCAGGAGCAGCAGTATTTCCTCAGTGGCTCTCTCCTTGGATGCCAATTTGGACCTTATGATGCAATTATGCAAATGCAGTCCATGCAAAATCAATGA 936 0.4541 MNRGIEVLSPASYLQSSNWLFQESLGTRWTPQENKLFENALAVYDKDTPDRWLKVAALIPGKTVGDVIKQYRELEEDVSVIESGFIPVPGYTADSFTLEWVNNQGFDGFRQFYSVTGKRGASTRPSEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKKRSSIHDITMVNLPEAKSPSSESNRPPSPDHSVKDVNPPQNQRLSTTMVVKQEHDWKLPCETVPMLLNSTNGNMFMAPLCGISSYGSKPIQEQQYFLSGSLLGCQFGPYDAIMQMQSMQNQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo199g00007 311 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Pumo199g00007 311 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Pumo199g00007 311 MobiDBLite consensus disorder prediction 200 232 - -
Pumo199g00007 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Pumo199g00007 311 Gene3D - 134 184 - -
Pumo199g00007 311 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 237 IPR043363 -
Pumo199g00007 311 CDD SANT 135 180 IPR001005 -
Pumo199g00007 311 SMART sant 132 182 IPR001005 -
Pumo199g00007 311 SMART sant 25 77 IPR001005 -
Pumo199g00007 311 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Pumo199g00007 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Pumo199g00007 311 CDD SANT 28 74 IPR001005 -
Pumo199g00007 311 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Pumo199g00007 311 FunFam Transcription factor SRM1 21 88 - -
Pumo199g00007 311 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Pumo199g00007 311 Gene3D - 22 88 - -
Pumo199g00007 311 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Pumo199g00007 311 FunFam transcription factor MYB1R1 134 185 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo199g00007 Myb_DNA-binding 4.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo199g00007 - - gmx:778077 580.867