Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo195g00002 ATGGAAGCGATGAACGAAGAATACGAGGAGGACCTTCTTGACTATGAGGATGAAGAAGAAAAAGACCCTGAAGATGTAGGAAATAAAGTCAATGGTGAAACTCCAACGAAGAGCTATGTTGGGATTCACAGTTCAGGATTTAGAGATTTTTTGTTGAAGCCAGAGCTTCTTCAGGCTATAATGGACTCTAGATTCGAGCATCCATCTGAAGGCAAATTATCTGCATCCTTATTTATAATAATTGTTATTGGATTTTTTTTTGGTAGGGATGATCATGGGTTAAAGCATTATAAAGGTTTTAAGGAGGGTTATACAAGAATTCTTGTGGCAACAGATTTGGTTGGTAGGGGTATTGATATTGAACATGTGAATGTTGTTATAAACTATGACATGCCTGATTCTGCAGATACATACTTGCATAGGGTTGGTCGAGCCGGAAGATTTGGAACCAAAGGCCTTGCAATTGCATTTGTTTCATCTTCAACTGATGTTGATGTTCTCAACAATGTTCAATCCAAGTTTGAAGTGGATATAAAGCAGCTTCCCGAGCGGGTTGATTCCCATACCTACAGAAGGTTGGGGGACAATGCTTCAATTACTTGGATGGTTTGGGGGACAATACTTCAAATACTTCAACAACAAATTCATTATGCAATTGTCAAGTCCTTGTAG 672 0.3869 MEAMNEEYEEDLLDYEDEEEKDPEDVGNKVNGETPTKSYVGIHSSGFRDFLLKPELLQAIMDSRFEHPSEGKLSASLFIIIVIGFFFGRDDHGLKHYKGFKEGYTRILVATDLVGRGIDIEHVNVVINYDMPDSADTYLHRVGRAGRFGTKGLAIAFVSSSTDVDVLNNVQSKFEVDIKQLPERVDSHTYRRLGDNASITWMVWGTILQILQQQIHYAIVKSL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo195g00002 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 194 IPR027417 -
Pumo195g00002 223 Pfam Helicase conserved C-terminal domain 97 149 IPR001650 -
Pumo195g00002 223 Coils Coil 1 21 - -
Pumo195g00002 223 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 168 - -
Pumo195g00002 223 SMART helicmild6 71 149 IPR001650 -
Pumo195g00002 223 MobiDBLite consensus disorder prediction 1 34 - -
Pumo195g00002 223 MobiDBLite consensus disorder prediction 1 23 - -
Pumo195g00002 223 CDD SF2_C_DEAD 98 158 - -
Pumo195g00002 223 Gene3D - 89 194 IPR027417 -
Pumo195g00002 223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 22 189 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo195g00002 94 190 Eukaryotic Initiation Factors Gene Family AT5G11170 78.351 1.22e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo195g00002 K12812 - gmx:100796232 177.563