Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo190g00027 ATGACTAGAAAGAAGGTGGACCTGGCATACATAACCAATGACTCGAAGAGGAAGGCAACATTAAAGAAAAGGAAAAATGGTTTGATCAAGAAACTTGATGAAATTAGCACCCTTTGTGGGATTGAAGCATGTGCTATAATCTATACTCCAAATGATCCTCAGCTAGAGGTTTGGCCATCTGATCTTGGAGTCCAAAGTGTGCTTTCTAGGTTTAGGAGAATTCCTGAACTGCAAAAGAGCAAAAAGATGTTTGATCAGGAAAGCTTTTTGAGGCAAAGTATCATCAAAGCCCAAGAGCAGCTGAACAAACAGAAGAATGAAAACAGGAAGGATGAGATGACCCTTCTCATGTTTCAATACCTGACTATTGGGAAGATTTTTAACAATCCTAACTTGATTGATTTGAATGATCTCTCATGGTTGATTGATCAAAACCTAAATGAAATAGAAAGGAAGATTAATCAGATCCAAACCCAAGAAGTGACACCAGTGATTGAAAATGGAGGAGAGCAAGCATATACAGATCATGTTCCAAGGCAAGAGACCAACATGAACGCCATGCAAAAGCAACATTGGTCCATGGAATTTATTAATGGTACTGCTAGGGATGAGATGCTACCATTCGGAGATGTTAATGTCCAAGATGACCTTTGGCCTAGCCCATATGTCCCTTGA 675 0.3956 MTRKKVDLAYITNDSKRKATLKKRKNGLIKKLDEISTLCGIEACAIIYTPNDPQLEVWPSDLGVQSVLSRFRRIPELQKSKKMFDQESFLRQSIIKAQEQLNKQKNENRKDEMTLLMFQYLTIGKIFNNPNLIDLNDLSWLIDQNLNEIERKINQIQTQEVTPVIENGGEQAYTDHVPRQETNMNAMQKQHWSMEFINGTARDEMLPFGDVNVQDDLWPSPYVP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo190g00027 224 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo190g00027 224 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Pumo190g00027 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo190g00027 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo190g00027 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo190g00027 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo190g00027 224 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Pumo190g00027 224 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Pumo190g00027 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pumo190g00027 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo190g00027 224 Coils Coil 87 114 - -
Pumo190g00027 224 PANTHER MADS BOX PROTEIN 3 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo190g00027 1 153 Type I MADS-box Gene Family AT5G48670 57.516 3.07e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo190g00027 SRF-TF 4.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo190g00027 - - gmx:100796517 338.576