Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo190g00026 ATGACCCGGAGAAAGGTGAAACTCACATTCATAGCCAATGATACGGAGAGGAAGACATCATACAAGAAAAGGAAGAAGTCACTGCTGAAGAAGACGGCGGAACTCAGCACCCTTTGTGGCATCGAAGCGTGTGCTATAGTTTATGGCCCCAATGATCCCGAGCCGGAGACTTGGCCATCCGAACCGGGTGTCCAAAATGTGCTGGGAAAGTTCAGGAGCATACCTGAATGGGAGCAGGGCAAGAAGATGGCGAACCAAGAGAGTTTCATTGCAGAAAGTATCCGGAAGGGTAGAGACAAGGTGAAGAAACTAGCGAAGGACAACAAAGAGAAGGAGATGACCATGTTCATGTATCAGTGCCTTAATGCAGGGATGGTTCAGCCTGATAATAACATGACTGTGGCTGATTTGAATGTTCTTTCATCTGTGATTGAACAGAACCTTAGGGACATTGGTAGAAGGTTGGAAACGATGAATGTTAATGAGAAGACACCACAGCAACCAACCCAGATGCAAACACCAGCACTACCGGCCGTGGCGCCTGAAGAAATGACACCGCTGAATTCTGTCATTGGGTCGGATATGAATGCTGACCCCATGCAAAGCCATTGGTTTATGGACTTGCTTAATGGCAATTATGAGGATGAAACACTAATGCCTCCATTTGGAGATGTTAATCTCCCACTCTAA 690 0.4667 MTRRKVKLTFIANDTERKTSYKKRKKSLLKKTAELSTLCGIEACAIVYGPNDPEPETWPSEPGVQNVLGKFRSIPEWEQGKKMANQESFIAESIRKGRDKVKKLAKDNKEKEMTMFMYQCLNAGMVQPDNNMTVADLNVLSSVIEQNLRDIGRRLETMNVNEKTPQQPTQMQTPALPAVAPEEMTPLNSVIGSDMNADPMQSHWFMDLLNGNYEDETLMPPFGDVNLPL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo190g00026 229 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Pumo190g00026 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo190g00026 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo190g00026 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Pumo190g00026 229 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Pumo190g00026 229 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Pumo190g00026 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pumo190g00026 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo190g00026 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo190g00026 229 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo190g00026 1 158 Type I MADS-box Gene Family AT5G48670 50.633 9.71e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo190g00026 SRF-TF 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo190g00026 - - gmx:100795996 353.599