Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo190g00025 ATGACCCGGAGAAAGATGAAACTCACAATCATAGCCAATAATTCTAAAAGGAAGGCATCATACAAGATAAGGAAGCAGTCACTGCTGAAGAAGACGGAGGAACTTACCACCCTGTGTGGAATTGAAGCATGTGCTATAGTTTATAGCCCCTATGATCATGAGCCACAGATTTGGCCATCCGAATCGGGTGTCCAAAATGTGATGCGAAAGTTCATGACTGTTCCTGAATGGGAGAAGAACAACAAGATGGCGAACCAAGAGAGCTTCATTGCACAAACTATCGTGAAGCATAACGAGAAGATGGCGAAACTTGTGAAGGAGAACAACGAGACCGAGATGACCATGTTCATGTTTAAGTGCCTTAACACAGGGAGGGTTCAGCCTCCTGATAACATGACCTCAGCAGATTTGAATGTTCTTTCATCGGTGATTGAACAGAAACTAAATGACATTAGTACAAGGTTGGAATTGTTAAAAGTCCAACAGATGCAAACCCTAGATTTCCAACCCCAGACGCAAACAACAGCACAGGCAGTAGCGCCTGAAGAAACCACACCGCTGAATAATGGCAATGGGTTGGATATGAATGCGAACCCCATGCAAAGCCAGCGGTTTATGGACTTGCTTAACGGTAATGGGGATGAGACAATATTGCCTCCATTTGGAGATGCTAATCTCCAACTCTAA 687 0.441 MTRRKMKLTIIANNSKRKASYKIRKQSLLKKTEELTTLCGIEACAIVYSPYDHEPQIWPSESGVQNVMRKFMTVPEWEKNNKMANQESFIAQTIVKHNEKMAKLVKENNETEMTMFMFKCLNTGRVQPPDNMTSADLNVLSSVIEQKLNDISTRLELLKVQQMQTLDFQPQTQTTAQAVAPEETTPLNNGNGLDMNANPMQSQRFMDLLNGNGDETILPPFGDANLQL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo190g00025 228 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Pumo190g00025 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Pumo190g00025 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo190g00025 228 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Pumo190g00025 228 Coils Coil 94 114 - -
Pumo190g00025 228 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Pumo190g00025 228 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo190g00025 228 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pumo190g00025 228 PANTHER MADS BOX PROTEIN 3 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo190g00025 1 159 Type I MADS-box Gene Family AT5G48670 49.057 1.67e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo190g00025 SRF-TF 4.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo190g00025 - - gmx:100795996 276.174